Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03401 ATGGATCATCTCTTAACCTTTGAAACACCTTCCCCTTCATCTCATGTTCCTCCTGTTAACGTTAATGTTCCTGTTCATGTTCCTTCTCTCACTCCCAATCTCACCATGTCTCACCCAATCCCCAACATTTCTCCCCAAAATCTCAACCCCCCAACCACCGATAAATCACTCCCAACCTTACTCGTACCAAAACCCGAACCTTTCGATGATTTCATGGCTGCCCAAGATTCCCAACAGACCCACTTCTCTCCGGGTTATCAAGAAGACGATCAATCTGATCTCTACACTGAATTCTACCGCGTTTCTCAGCTTTTCAATGCTACTTTCGGTACATCTTTGGGCCCTTTCTTTGCAATCAATGATTCGGCCAGTGTTAATGTTGCTCCTTCGGTTGTTGAGGAAACAGTTGTCAACAATGTTTGTAACCCAGACCTAAATCTGAACCCTAATATAGGCGTTGAATCCGCGGATTCTCATCCTCAGTCGTATGATAACAATGATGGAAATGATAACAATGATATGGCTATTGTTGTTGTTCCGGAGAAACAAGAATCGACTTCGGCAGTTGCTGTGGCTTCTAGGAAGAAGGCGAGCCAGGTGATGGAGCTTGTGAGGGTTTCAGATCTGAGTATGAAGGAACATATAAATTGTCGGGAGGTGATGAGGAGGACAAGGATGGTCTATGATTCGCTTCGCGTGTTGGCGAGCATTGAAGAGGAAAAGAGATTTGCTGCGGAAGTTGCTGTGGAGGAAGAGAAGAGAGTGGCTGAGGAGAAAAGGTTGGCTGAGGAGAGGAGATTGGCGGAAGAAGTTGCGGTTATGGAGGAGGAGATGAGAATAGGTGAGGAGAAGAGTGGGCAGGCTGCAGGGGTGGAGGTGGAAACAGAAACGCCGAGTGGAAAAAAGAGGCGTATCCGTATTCGTGGTGATATGAGGGCGGCAGCGTTAATGAGGAAGAGTCAGTTGTGGCTGTATCGAGATAAGAGGATAGTTGGACCGATACCTGGAGTTTATGTTGGTGATGTGTTTCTTTTTAGGATGGAATTGTGTGTGGTTGGTTTGCATATGCAGATACAAGCTGGGATTGATTATCTACCGAAAAGTAGGTGTTCCAATGGTGAACCGATTGCTACTAGTGTGATTGTTTCGGGTGGATACGAGGATGATATGGAGTTGGATGATGGTGATGTTATAATCTACACTGGCCATGGAGGGCAGGAGAAGAACTCGTCTAGGCAAATTTGTGATCAGAAATTGGTGGGTGGAAACCTTGCTTTGGAAAGGAGTATGCATTATGGGATTGAGGTTAGGGTTATTCGCGGGATGAAGTATGAAGGGAGTGCGTCCGGTTCTGGTAAGATTTATGTTTATGATGGAGTGTATAGGATTGTTGAGTGTTGGTTTGATGTAGGAAAGTCTGGTTTTGGAGTTTATAAGTATAAGCTTTTGAGAATTGAGGGGCAGGCTAAGATGGGCAGTGCTGTTCTCAAAGATGCTCGGGAAATTAGGAAAAGTGGGTTCGACTTTAAGCCTATGCATTGTCTTTCCATTGATATTTCGGACAAGAGGGAGAAGGTTCCTATTAGGCTTTTTAATGACATAGATGACAGTCAGGAACCTCTTTATTATCAGTATCTTCCAAATACTAGTTTCCCGCCGTTTGTGTTTCATCAGAATGGGAAAGCTACTGGATGTGAGTGTGTCGATGGTTGTACTGATGGTTGTTTTTGCTCTGTGAAGAATGGAGGAGAGCATCCTTATAATCTACAGGGTTTGCTTGTGAGAGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGCTCATGTCCTCCCAATTGTCGTAACCGTGTTGCACAAAAGGGGCTCAAATATAGGTTGGAAGTGTTTAGGTCTACACAGACAGGTTGGGGAGTTAGGTCTTTGGACCTTATTCAGGCTGGAGCCTTTATCTGCGAGTATACGGGGGTTGTTTTGACTAGGGAGCAAGCAGAAATTTTAACAATGAACGGTGATTCGTTGATATATCCTAATCGGTTTTCAGATAGATGGGCAGAATGGGGGGATTTATCTCAGATATACACTGAATATGCGCGTCCGTCCTATCCATCAATTCCTCCTCTAGATTTTTCTCTGGATGTGTCTACAATGAGAAATGTTGCTTGCTATATGAGCCATAGTTCAAGTCCAAATGTATTTGTTCAGTTTGTTCTCTATGATCACAACAATTTGATGTTTCCTCATGTTATGCTATATGCAATGGAGAACATCCCTCCAATGAGAGAGCTAAGCGTTGATTATGGAGTTGCGGATGAGTGGACGGGAAAACTCTCTATATGTATGTAA 2343 0.44 MDHLLTFETPSPSSHVPPVNVNVPVHVPSLTPNLTMSHPIPNISPQNLNPPTTDKSLPTLLVPKPEPFDDFMAAQDSQQTHFSPGYQEDDQSDLYTEFYRVSQLFNATFGTSLGPFFAINDSASVNVAPSVVEETVVNNVCNPDLNLNPNIGVESADSHPQSYDNNDGNDNNDMAIVVVPEKQESTSAVAVASRKKASQVMELVRVSDLSMKEHINCREVMRRTRMVYDSLRVLASIEEEKRFAAEVAVEEEKRVAEEKRLAEERRLAEEVAVMEEEMRIGEEKSGQAAGVEVETETPSGKKRRIRIRGDMRAAALMRKSQLWLYRDKRIVGPIPGVYVGDVFLFRMELCVVGLHMQIQAGIDYLPKSRCSNGEPIATSVIVSGGYEDDMELDDGDVIIYTGHGGQEKNSSRQICDQKLVGGNLALERSMHYGIEVRVIRGMKYEGSASGSGKIYVYDGVYRIVECWFDVGKSGFGVYKYKLLRIEGQAKMGSAVLKDAREIRKSGFDFKPMHCLSIDISDKREKVPIRLFNDIDDSQEPLYYQYLPNTSFPPFVFHQNGKATGCECVDGCTDGCFCSVKNGGEHPYNLQGLLVRGKPLIFECGPFCSCPPNCRNRVAQKGLKYRLEVFRSTQTGWGVRSLDLIQAGAFICEYTGVVLTREQAEILTMNGDSLIYPNRFSDRWAEWGDLSQIYTEYARPSYPSIPPLDFSLDVSTMRNVACYMSHSSSPNVFVQFVLYDHNNLMFPHVMLYAMENIPPMRELSVDYGVADEWTGKLSICM 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03401 780 Gene3D - 329 492 IPR036987 -
Vivi1g03401 780 Coils Coil 234 254 - -
Vivi1g03401 780 Gene3D SET domain 493 780 IPR046341 -
Vivi1g03401 780 ProSiteProfiles SET domain profile. 624 767 IPR001214 GO:0005515
Vivi1g03401 780 SUPERFAMILY PUA domain-like 314 497 IPR015947 -
Vivi1g03401 780 SMART set_7 624 773 IPR001214 GO:0005515
Vivi1g03401 780 Pfam SAD/SRA domain 331 488 IPR003105 -
Vivi1g03401 780 Pfam SET domain 635 767 IPR001214 GO:0005515
Vivi1g03401 780 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 148 774 - -
Vivi1g03401 780 ProSiteProfiles Pre-SET domain profile. 563 621 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi1g03401 780 SMART G9a_1 327 488 IPR003105 -
Vivi1g03401 780 SUPERFAMILY SET domain 509 779 IPR046341 -
Vivi1g03401 780 SMART preset_2 516 608 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi1g03401 780 ProSiteProfiles YDG domain profile. 332 484 IPR003105 -
Vivi1g03401 780 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 123 779 IPR025794 GO:0016571
Vivi1g03401 780 Pfam Pre-SET motif 519 616 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03401 Vivi-Chr1 73248027 73253220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03401 328 769 Su(var)3-9 homologs AT1G73100 41.447 9.23e-98 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi1g03401 SAD_SRA 8.9e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03401 - K11420 tpra:123924427 944.88