Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03396 ATGGCTCGTTCAATTTCTTTGTTTTCCACCATCTTTGTCTTTCTCCTTCTTCTCGTGGCCACTGAGATGGGTCCGAGTATTGTGGCAGAGGCAAGAAATTGTGAGTCACCAAGTCAAAAATTCAAAGGATTATGTTTGAGTGACACCAACTGTGCTAGTGTGTGTAAAACTGAGGGTTTTCCCGGAGGAAATTGCAAAGGCTTGCGTCGGAGATGTTTTTGCACTAAACCTTGTTAA 237 0.4304 MARSISLFSTIFVFLLLLVATEMGPSIVAEARNCESPSQKFKGLCLSDTNCASVCKTEGFPGGNCKGLRRRCFCTKPC 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03396 78 Gene3D - 32 78 IPR036574 -
Vivi1g03396 78 ProSitePatterns Gamma-thionins family signature. 32 55 IPR008176 GO:0006952
Vivi1g03396 78 SMART gth_4 33 78 IPR003614 GO:0006952
Vivi1g03396 78 CDD Knot1 43 75 IPR003614 GO:0006952
Vivi1g03396 78 PRINTS Purothionin signature 33 48 IPR008176 GO:0006952
Vivi1g03396 78 PRINTS Purothionin signature 63 77 IPR008176 GO:0006952
Vivi1g03396 78 PANTHER DEFENSIN-LIKE PROTEIN 1 1 78 - -
Vivi1g03396 78 Pfam Gamma-thionin family 32 78 - -
Vivi1g03396 78 SUPERFAMILY Scorpion toxin-like 32 78 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03396 Vivi-Chr1 73129899 73130448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03396 1 78 Plant Defensins Gene Families AT2G02120 56.410 8.12e-29 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03396 - - gsj:114420878 128.642