Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03395 ATGGCTCGTTCAATTTCTTTGGTCTCTACCATCTTTGTCTTCGTTCTCCTTCTTGTGGCCACTGGGCCAAGTATGGTGGCAGAGGCAAGAGATTGTGAATCTAAAAGTCACAAGTTCAAAGGAAAATGTTTGAGTGACACCAACTGTGCTTCTGTGTGCAAAACAGAACGTTTCACTGGCGGACACTGCCGTGGATTCCGTCAAAGATGCTTTTGCACTACACACTGTTGA 231 0.4545 MARSISLVSTIFVFVLLLVATGPSMVAEARDCESKSHKFKGKCLSDTNCASVCKTERFTGGHCRGFRQRCFCTTHC 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03395 76 SMART gth_4 31 76 IPR003614 GO:0006952
Vivi1g03395 76 Gene3D - 30 76 IPR036574 -
Vivi1g03395 76 SUPERFAMILY Scorpion toxin-like 31 76 IPR036574 -
Vivi1g03395 76 CDD Knot1 41 73 IPR003614 GO:0006952
Vivi1g03395 76 PANTHER DEFENSIN-LIKE PROTEIN 1 1 76 - -
Vivi1g03395 76 ProSitePatterns Gamma-thionins family signature. 30 53 IPR008176 GO:0006952
Vivi1g03395 76 PRINTS Purothionin signature 31 46 IPR008176 GO:0006952
Vivi1g03395 76 PRINTS Purothionin signature 61 75 IPR008176 GO:0006952
Vivi1g03395 76 Pfam Gamma-thionin family 31 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03395 Vivi-Chr1 73123163 73123814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03395 1 76 Plant Defensins Gene Families AT2G02100 55.844 5.83e-27 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03395 - - gmx:547843 135.191