Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03386 ATGGAGAAAAAAGATTCCTCTGGTAATAGTAAGTGGATGGCATTTGCTAACAAGAATGATGAAAACTCAGCTGCAACAAAGGCTGCTTCTGGTGATGATGATGATGATCAAATTCTAACCGAAGCAGCCATAGCCGAGAGGACGGCGGAATGGGGACTTGTTGTGAACTCGAGCAATTTCAAAGCGGGAATTGAGACATCAAGTTCTTCAGTTGATGGTGACAAGAGCAGAAGCATGTCGGATAGGTTTGTTGAATCGACGAGGACTTCGGGGGATTCGAATTTTGGTTCGGAGGCTAGATTGTCAGGGTTGATTCCAAGAGTTTCACAAGACTTGAAAGAAGCATTGGCTACACTTCAACAAACATTTGTTGTGTCGGATGCAACTAAGCCTGATTGTCCTATCTTGTATGCAAGCAGTGGCTTTTTTACTATGACTGGTTATTCATCAAAAGAGGTTATTGGAAGGAATTGTCGATTTCTTCAAGGACCTGAAACTGACATGAATGAAGTAGCAAAAATTCGGGATGCAACTAAGAATGGGAGAAGTTATTGCGGCAGGCTTTTAAACTACAAGAAAAATGGAACACCATTTTGGAATCTTCTAACTGTTACACCAATCAAAGATGATCATGGCAATACTATCAAATTCATAGGAATGCAGGTTGAGGTGAGCAAGTACACGGAAGGTGTGAACGAGAAGGAACTAAGACCAAATGGATTACCAAAATCATTAATTCGCTACGACGCTCGTCAAAAGGAGAAAGCTATGGGTTCAATCACCGAGGTTATTCAAACCGTTAAGGATCCTAAATCGACTATTCGCGGTAAGAATGAGGACACTTCCACCACATTGCATGAAGATCAAGAGAATCTCAATCACGAATTTGCTTTGCCAAAGTCTGTTGAATCTGTGAATGCTGGTACACCACTTGGTAGACAAACTCCGTTGAAACTCCATGGTGATAGTAATAATATTTCGCGCTTTAGTTCTTACGAGGAAAGGAGCAAGTCGTCAAGAAAATCAGGAGTTTCTTTGAAAGGTAATAAAGGGAAATCAATGAGTTCACTTGGGAGAGATAAGGAGAAGGCTATTATTGAACCTGAAGTTTTGATGACAAAGGAAGTAGAATGGTCCAATTGGGAACTAGGAGAGAGGGATATAAGGCAAGGAATTGATTTAGCAACCACATTGGAAAGGATAGAAAAGAATTTTGTGATTTCTGATCCTAGACTTCCAGATTGTCCTATAATATTTGCATCAGATAGCTTTCTTGAGCTTACAGAATACACGCGAGAAGAAATTTTGGGTCGGAATTGCCGGTTTCTTCAAGGACCAGAAACAGACCAGGCAACTGTCTCTAGAATTAGAGATGCTATCAAAGATCAGAGGGAAATCACAGTTCAGTTGATCAATTATACTAAGAGTGGAAAGAAATTCTGGAATTTGTTTCACTTGCAGCCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAACTGGATGGAAGTGATCATTTAGAGCCTTTAAGAAACCGCCTCTCTGAGGGTTCCGAGCTACAAAGTGCTAAATTGGTGAAAGCTACTGCAGAAAATGTTGATGAAGCTGTTAGAGAACTTCCTGATGCCAATTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAAACAGTTTTTCCAAGACCACACAAAAGGGACAATCCTTGTTGGGTTGCTATTCAAAAGATCACCGCAAGAGGCGAGAAAATTGGCCTTCATCATTTTTCTCCCATAAGGCCTTTGGGTTGTGGAGATACTGGCAGTGTTCATTTAGTGGAACTTCGAGGTACCGGCGAACTATATGCAATGAAGGCAATGGAAAAGTCTGTAATGATGAATCGTAATAAGGTTCATCGAGCGTGCATTGAAAGAGAGATTATATCATTACTAGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGACAGACACGCATGTATGTTTGATTACTGACTTCTGCCCTGGGGGTGAGTTGTTTGCGTTACTCGACAGGCAACCCATGAAGATTCTAAAAGAAGATTCAGCAAGATTCTATGCAGCAGAGGTTGTTATCGGCTTGGAATATCTCCATTGTTTGGGTATAGTTTATCGTGACTTAAAGCCCGAAAATCTGTTACTTCAAAAGGATGGCCATGTTGTATTAACCGATTTTGATCTCTCATTTATTACATCTTGTAAACCCCAGGTTATGAAGCAGTCATTACCTGGTAATAGAAGCGGTAGAAGATCTCGAAGTCAGCCACCACCAATATTTTTTGCCGAGCCAATTACACAATCAAACTCATTTGTTGGAACTGAAGAATATATTTCCCCGGAAATCATAACCGGAGCGAGGCATACAAGTGCTATAGACTGGTGGACCCTTGGTATCTTGTTGTACGAGATGCTATATGGTCGTACACCATTTCGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCAAGTCTTGCAGCCAGGCAGATTATTAACGCACTATTGCAAAGAGACCCGGGCAGTCGTCTAGGTTCAACAACAGGAGCTAATGAAATCAAACAACATCCTTTTTTCCGTGGAATCAATTGGCCTTTAATCCGCAACATGAATCCACCACCTTTAGATGTTCCTCCTCAGTTGATAGGAAAAGATCCGACAGTAAAGGACAAGAAATGGGAAGATGATGGCGTGCTAATTAGTTCCATCGATATGGATATTTTTTGA 2790 0.41 MEKKDSSGNSKWMAFANKNDENSAATKAASGDDDDDQILTEAAIAERTAEWGLVVNSSNFKAGIETSSSSVDGDKSRSMSDRFVESTRTSGDSNFGSEARLSGLIPRVSQDLKEALATLQQTFVVSDATKPDCPILYASSGFFTMTGYSSKEVIGRNCRFLQGPETDMNEVAKIRDATKNGRSYCGRLLNYKKNGTPFWNLLTVTPIKDDHGNTIKFIGMQVEVSKYTEGVNEKELRPNGLPKSLIRYDARQKEKAMGSITEVIQTVKDPKSTIRGKNEDTSTTLHEDQENLNHEFALPKSVESVNAGTPLGRQTPLKLHGDSNNISRFSSYEERSKSSRKSGVSLKGNKGKSMSSLGRDKEKAIIEPEVLMTKEVEWSNWELGERDIRQGIDLATTLERIEKNFVISDPRLPDCPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRIRDAIKDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHLEPLRNRLSEGSELQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQTVFPRPHKRDNPCWVAIQKITARGEKIGLHHFSPIRPLGCGDTGSVHLVELRGTGELYAMKAMEKSVMMNRNKVHRACIEREIISLLDHPFLPTLYTSFQTDTHVCLITDFCPGGELFALLDRQPMKILKEDSARFYAAEVVIGLEYLHCLGIVYRDLKPENLLLQKDGHVVLTDFDLSFITSCKPQVMKQSLPGNRSGRRSRSQPPPIFFAEPITQSNSFVGTEEYISPEIITGARHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQIINALLQRDPGSRLGSTTGANEIKQHPFFRGINWPLIRNMNPPPLDVPPQLIGKDPTVKDKKWEDDGVLISSIDMDIF 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03386 929 ProSiteProfiles PAS repeat profile. 108 181 IPR000014 -
Vivi1g03386 929 SMART serkin_6 591 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03386 929 SUPERFAMILY Protein kinase-like (PK-like) 570 907 IPR011009 -
Vivi1g03386 929 Gene3D Transferase(Phosphotransferase) domain 1 675 894 - -
Vivi1g03386 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 712 724 IPR008271 GO:0004672|GO:0006468
Vivi1g03386 929 Gene3D Phosphorylase Kinase; domain 1 590 674 - -
Vivi1g03386 929 CDD STKc_phototropin_like 589 903 - -
Vivi1g03386 929 Pfam PAS domain 413 505 IPR000014 -
Vivi1g03386 929 Pfam PAS domain 129 225 IPR000014 -
Vivi1g03386 929 FunFam LOV domain-containing protein 590 674 - -
Vivi1g03386 929 CDD PAS 417 505 IPR000014 -
Vivi1g03386 929 SMART pas_2 110 179 IPR000014 -
Vivi1g03386 929 SMART pas_2 392 461 IPR000014 -
Vivi1g03386 929 MobiDBLite consensus disorder prediction 318 332 - -
Vivi1g03386 929 Pfam Protein kinase domain 594 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03386 929 NCBIfam PAS domain S-box protein 417 505 IPR000014 -
Vivi1g03386 929 NCBIfam PAS domain S-box protein 134 225 IPR000014 -
Vivi1g03386 929 Gene3D PAS domain 382 543 - -
Vivi1g03386 929 ProSiteProfiles PAC domain profile. 464 518 IPR000700 -
Vivi1g03386 929 SUPERFAMILY PYP-like sensor domain (PAS domain) 129 221 IPR035965 -
Vivi1g03386 929 SUPERFAMILY PYP-like sensor domain (PAS domain) 409 505 IPR035965 -
Vivi1g03386 929 SMART pac_2 185 227 IPR001610 -
Vivi1g03386 929 SMART pac_2 467 509 IPR001610 -
Vivi1g03386 929 MobiDBLite consensus disorder prediction 1 36 - -
Vivi1g03386 929 Gene3D PAS domain 122 293 - -
Vivi1g03386 929 FunFam Putative LOV domain-containing protein 122 278 - -
Vivi1g03386 929 PANTHER FLIPPASE KINASE 1-RELATED 104 897 - -
Vivi1g03386 929 CDD PAS 135 224 IPR000014 -
Vivi1g03386 929 ProSiteProfiles Protein kinase domain profile. 591 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03386 929 FunFam Putative LOV domain-containing protein 675 892 - -
Vivi1g03386 929 FunFam LOV domain-containing protein 380 543 - -
Vivi1g03386 929 MobiDBLite consensus disorder prediction 10 26 - -
Vivi1g03386 929 ProSiteProfiles PAS repeat profile. 390 463 IPR000014 -
Vivi1g03386 929 MobiDBLite consensus disorder prediction 298 359 - -
Vivi1g03386 929 ProSitePatterns Protein kinases ATP-binding region signature. 597 620 IPR017441 GO:0005524
Vivi1g03386 929 MobiDBLite consensus disorder prediction 749 770 - -
Vivi1g03386 929 ProSiteProfiles PAC domain profile. 182 236 IPR000700 -
Vivi1g03386 929 MobiDBLite consensus disorder prediction 65 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03386 Vivi-Chr1 72837004 72843422 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03386 42 928 AGC Kinase Gene Family AT5G58140 72.085 0.0 1279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vivi1g03386 Pkinase 1.2e-59 CL0016