Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03385 ATGGAGAAAAAAGATTCCTCTGGTAATAGTAAGTGGATGGCATTTGCTAACAAGAATGATGAAAACTCAGCTGCAACAAAGGCTGCTTCTGGTGATGATGATGATGATCAAATTCTAACCGAAGCAGCCATAGCCGAGAGGACGGCGGAATGGGGACTTGTTGTGAACTCGAGCAATTTCAAAGCGGGAATTGAGACATCAAGTTCTTCAGTTGATGGTGACAAGAGCAGAAGCATGTCGGATAGGTTTGTTGAATCGACGAGGACTTCGGGGGATTCGAATTTTGGTTCGGAGGCTAGATTGTCAGGGTTGATTCCAAGAGTTTCACAAGACTTGAAAGAAGCATTGGCTACACTTCAACAAACATTTGTTGTGTCGGATGCAACTAAGCCTGATTGTCCTATCTTGTATGCAAGCAGTGGCTTTTTTACTATGACTGGTTATTCATCAAAAGAGGTTATTGGAAGGAATTGTCGATTTCTTCAAGGACCTGAAACTGACATGAATGAAGTAGCAAAAATTCGGGATGCAACTAAGAATGGGAGAAGTTATTGCGGCAGGCTTTTAAACTACAAGAAAAATGGAACACCATTTTGGAATCTTCTAACTGTTACACCAATCAAAGATGATCATGGCAATACTATCAAATTCATAGGAATGCAGGTTGAGGTGAGCAAGTACACGGAAGGTGTGAACGAGAAGGAACTAAGACCAAATGGATTACCAAAATCATTAATTCGCTACGACGCTCGTCAAAAGGAGAAAGCTATGGGTTCAATCACCGAGGTTATTCAAACCGTTAAGGATCCTAAATCGACTATTCGCGGTAAGAATGAGGACACTTCCACCACATTGCATGAAGATCAAGAGAATCTCAATCACGAATTTGCTTTGCCAAAGTCTGTTGAATCTGTGAATGCTGGTACACCACTTGGTAGACAAACTCCGTTGAAACTCCATGGTGATAGTAATAATATTTCGCGCTTTAGTTCTTACGAGGAAAGGAGCAAGTCGTCAAGAAAATCAGGAGTTTCTTTGAAAGGTAATAAAGGGAAATCAATGAGTTCACTTGGGAGAGATAAGGAGAAGGCTATTATTGAACCTGAAGTTTTGATGACAAAGGAAGTAGAATGGTCCAATTGGGAACTAGGAGAGAGGGATATAAGGCAAGGAATTGATTTAGCAACCACATTGGAAAGGATAGAAAAGAATTTTGTGATTTCTGATCCTAGACTTCCAGATTGTCCTATAATATTTGCATCAGATAGCTTTCTTGAGCTTACAGAATACACGCGAGAAGAAATTTTGGGTCGGAATTGCCGGTTTCTTCAAGGACCAGAAACAGACCAGGCAACTGTCTCTAGAATTAGAGATGCTATCAAAGATCAGAGGGAAATCACAGTTCAGTTGATCAATTATACTAAGAGTGGAAAGAAATTCTGGAATTTGTTTCACTTGCAGCCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAACTGGATGGAAGTGATCATTTAGAGCCTTTAAGAAACCGCCTCTCTGAGGGTTCCGAGCTACAAAGTGCTAAATTGGTGAAAGCTACTGCAGAAAATGTTGATGAAGCTGTTAGAGAACTTCCTGATGCCAATTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAAACAGTTTTTCCAAGACCACACAAAAGGGACAATCCTTGTTGGGTTGCTATTCAAAAGATCACCGCAAGAGGCGAGAAAATTGGCCTTCATCATTTTTCTCCCATAAGGCCTTTGGGTTGTGGAGATACTGGCAGTGTTCATTTAGTGGAACTTCGAGGTACCGGCGAACTATATGCAATGAAGGCAATGGAAAAGTCTGTAATGATGAATCGTAATAAGGTTCATCGAGCGTGCATTGAAAGAGAGATTATATCATTACTAGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGACAGACACGCATGTATGTTTGATTACTGACTTCTGCCCTGGGGGTGAGTTGTTTGCGTTACTCGACAGGCAACCCATGAAGATTCTAAAAGAAGATTCAGCAAGATTCTATGCAGCAGAGGTTGTTATCGGCTTGGAATATCTCCATTGTTTGGTTTATCGTGACTTAAAGCCCGAAAATCTGTTACTTCAAAAGGATGGCCATGTTGTATTAACCGATTTTGATCTCTCATTTATTACATCTTGTAAACCCCAGGTTATGAAGCAGTCATTACCTGGTAATAGAAGCGGTAGAAGATCTCGAAGTCAGCCACCACCAATATTTTTTGCCGAGCCAATTACACAATCAAACTCATTTGTTGGAACTGAAGAATATATTTCCCCGGAAATCATAACCGGAGCGAGGCATACAAGTGCTATAGACTGGTGGACCCTTGGTATCTTGTTGTACGAGATGCTATATGGTCGTACACCATTTCGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCAAGTCTTGCAGCCAGGCAGATTATTAACGCACTATTGCAAAGAGACCCGGGCAGTCGTCTAGGTTCAACAACAGGAGCTAATGAAATCAAACAACATCCTTTTTTCCGTGGAATCAATTGGCCTTTAATCCGCAACATGAATCCACCACCTTTAGATGTTCCTCCTCAGTTGATAGGAAAAGATCCGACAGTAAAGGACAAGAAATGGGAAGATGATGGCGTGCTAATTAGTTCCATCGATATGGATATTTTTTGA 2784 0.4102 MEKKDSSGNSKWMAFANKNDENSAATKAASGDDDDDQILTEAAIAERTAEWGLVVNSSNFKAGIETSSSSVDGDKSRSMSDRFVESTRTSGDSNFGSEARLSGLIPRVSQDLKEALATLQQTFVVSDATKPDCPILYASSGFFTMTGYSSKEVIGRNCRFLQGPETDMNEVAKIRDATKNGRSYCGRLLNYKKNGTPFWNLLTVTPIKDDHGNTIKFIGMQVEVSKYTEGVNEKELRPNGLPKSLIRYDARQKEKAMGSITEVIQTVKDPKSTIRGKNEDTSTTLHEDQENLNHEFALPKSVESVNAGTPLGRQTPLKLHGDSNNISRFSSYEERSKSSRKSGVSLKGNKGKSMSSLGRDKEKAIIEPEVLMTKEVEWSNWELGERDIRQGIDLATTLERIEKNFVISDPRLPDCPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRIRDAIKDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHLEPLRNRLSEGSELQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQTVFPRPHKRDNPCWVAIQKITARGEKIGLHHFSPIRPLGCGDTGSVHLVELRGTGELYAMKAMEKSVMMNRNKVHRACIEREIISLLDHPFLPTLYTSFQTDTHVCLITDFCPGGELFALLDRQPMKILKEDSARFYAAEVVIGLEYLHCLVYRDLKPENLLLQKDGHVVLTDFDLSFITSCKPQVMKQSLPGNRSGRRSRSQPPPIFFAEPITQSNSFVGTEEYISPEIITGARHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQIINALLQRDPGSRLGSTTGANEIKQHPFFRGINWPLIRNMNPPPLDVPPQLIGKDPTVKDKKWEDDGVLISSIDMDIF 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03385 927 FunFam Putative LOV domain-containing protein 675 890 - -
Vivi1g03385 927 ProSiteProfiles PAS repeat profile. 108 181 IPR000014 -
Vivi1g03385 927 NCBIfam PAS domain S-box protein 417 505 IPR000014 -
Vivi1g03385 927 NCBIfam PAS domain S-box protein 134 225 IPR000014 -
Vivi1g03385 927 Gene3D PAS domain 382 543 - -
Vivi1g03385 927 Pfam PAS domain 413 505 IPR000014 -
Vivi1g03385 927 Pfam PAS domain 129 225 IPR000014 -
Vivi1g03385 927 FunFam LOV domain-containing protein 590 674 - -
Vivi1g03385 927 CDD PAS 417 505 IPR000014 -
Vivi1g03385 927 Gene3D Phosphorylase Kinase; domain 1 590 674 - -
Vivi1g03385 927 SMART pas_2 110 179 IPR000014 -
Vivi1g03385 927 SMART pas_2 392 461 IPR000014 -
Vivi1g03385 927 MobiDBLite consensus disorder prediction 318 332 - -
Vivi1g03385 927 PANTHER FLIPPASE KINASE 1-RELATED 104 895 - -
Vivi1g03385 927 SMART serkin_6 591 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03385 927 ProSiteProfiles PAC domain profile. 464 518 IPR000700 -
Vivi1g03385 927 SUPERFAMILY PYP-like sensor domain (PAS domain) 129 221 IPR035965 -
Vivi1g03385 927 SUPERFAMILY PYP-like sensor domain (PAS domain) 409 505 IPR035965 -
Vivi1g03385 927 SMART pac_2 185 227 IPR001610 -
Vivi1g03385 927 SMART pac_2 467 509 IPR001610 -
Vivi1g03385 927 MobiDBLite consensus disorder prediction 1 36 - -
Vivi1g03385 927 MobiDBLite consensus disorder prediction 747 766 - -
Vivi1g03385 927 ProSiteProfiles Protein kinase domain profile. 591 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03385 927 Gene3D PAS domain 122 293 - -
Vivi1g03385 927 FunFam Putative LOV domain-containing protein 122 278 - -
Vivi1g03385 927 CDD STKc_phototropin_like 589 901 - -
Vivi1g03385 927 CDD PAS 135 224 IPR000014 -
Vivi1g03385 927 MobiDBLite consensus disorder prediction 297 359 - -
Vivi1g03385 927 Gene3D Transferase(Phosphotransferase) domain 1 675 892 - -
Vivi1g03385 927 Pfam Protein kinase domain 594 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03385 927 FunFam LOV domain-containing protein 380 543 - -
Vivi1g03385 927 MobiDBLite consensus disorder prediction 10 26 - -
Vivi1g03385 927 ProSiteProfiles PAS repeat profile. 390 463 IPR000014 -
Vivi1g03385 927 ProSitePatterns Protein kinases ATP-binding region signature. 597 620 IPR017441 GO:0005524
Vivi1g03385 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 710 722 IPR008271 GO:0004672|GO:0006468
Vivi1g03385 927 ProSiteProfiles PAC domain profile. 182 236 IPR000700 -
Vivi1g03385 927 SUPERFAMILY Protein kinase-like (PK-like) 570 905 IPR011009 -
Vivi1g03385 927 MobiDBLite consensus disorder prediction 65 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03385 Vivi-Chr1 72837002 72843422 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03385 42 926 AGC Kinase Gene Family AT5G58140 71.861 0.0 1270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vivi1g03385 Pkinase 2.6e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03385 K20715 - gmx:100804783 1474.91