Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03384 ATGGCCACACTATTCCGAAAACTACGCGACTCAGCAGCATCGTTTAAACGATCCACCACCGCCACAACAACCACCTCGAACAATTCATCACAACGATCTCATCATCATGACGCTCCTTTGGGTTTATTCGACTCACTCCCTTCTGACATACTCCTCAAAATCATACGATTGTTGGAACCTAAACACGCCGCTAAACTCTGCATCGTTTGCAAATCATGGCGATCTCTTGTTTCCGATAACGAACTCTGGGATCATTTCCTTCACAATCACCAGCCTCTACACTACGATTCCATTATCTTCTCGGAAACTAAATTAACCTCTGGTTATCCTCTTCCGTTCTTTGTTACTCAAACGCCACGCGTGTTGTCGTTTAAGCATATTTATGGCCAACGGGAACGACTTCCTCCTGCTGTTATCATCGACGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAAGAGGAGCGTCCATTGGGGCGAACTCCTACCTTTTTGGAATTTGGTAATGTGGAGACACCGATATATACTAGGCTTCGACATTTTTTTGGGACCGTCTATGGCAGGATGAAGGTGAAACCAAGTTCTCAAGCAGTTGTTGTTTCTTTACCAATATGCCACTATGATGATACCGAATCAGCCAGAGCATCAAGACAGCAGCTTAAAGATGCAATCTGTGCTGCTCTATTTGACCTGAATGTTCCTGCTGTTTGTGCTCTCAACCAGGCAACTTTAGCTCTGTATGCTGCAAAACAAACTTCTGGAATATCTATTAATATAGGCTTTCAAGTCACATCTGTAGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTGGGTGTGGAGGTTGTGGGGCTGGGAGCACTAAAACTTACAGGGTTTCTTAGAGAGAAAATGCAACAAAACAGCTTAAATTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGAAGCTATGCTATGTGGCGTATGACTATGAAGCTGAGCTATTGAAAGATACACAAGCATCATTTGAAGCTGGTGAAGGGAGGTATACACTCTCGAAAGAGCGGTTTCAAACAGGAGAGATCTTATTCCAGCCACGTCTTGCTGGGGTTCGAGCAATGAGTTTGCACCAGGCCACAGCTCTCTGTGTGGACCATTGCTATTCTGCAGAATTAGCAGGCGGCAGTGATTGGTTTAAGACCATTGTCTTATCAGGAGGTTCTGCATGTTTACCAGGTTTAGCAGAAAGGTTAGAGAAGGAACTTCATTCGTTACTTCCTCCTGATATGTCGAATGGAATCAGAGTCATCCCTCCTCCACATGGTGCGGATACTGCATGGTTTGGTGCAAAGCTTATTGGCAGTTTGAGCACATTTCCTGCCCCCTGGTGTACAACAAAGAAGCAGTTCCGTCAGAAGTCTAAACTCAACCGAATATGGTGA 1425 0.4435 MATLFRKLRDSAASFKRSTTATTTTSNNSSQRSHHHDAPLGLFDSLPSDILLKIIRLLEPKHAAKLCIVCKSWRSLVSDNELWDHFLHNHQPLHYDSIIFSETKLTSGYPLPFFVTQTPRVLSFKHIYGQRERLPPAVIIDGGSGYCKFGWSKEERPLGRTPTFLEFGNVETPIYTRLRHFFGTVYGRMKVKPSSQAVVVSLPICHYDDTESARASRQQLKDAICAALFDLNVPAVCALNQATLALYAAKQTSGISINIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNSLNFESLYTVRTLKEKLCYVAYDYEAELLKDTQASFEAGEGRYTLSKERFQTGEILFQPRLAGVRAMSLHQATALCVDHCYSAELAGGSDWFKTIVLSGGSACLPGLAERLEKELHSLLPPDMSNGIRVIPPPHGADTAWFGAKLIGSLSTFPAPWCTTKKQFRQKSKLNRIW 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03384 474 SMART actin_3 135 474 IPR004000 -
Vivi1g03384 474 MobiDBLite consensus disorder prediction 15 35 - -
Vivi1g03384 474 SUPERFAMILY Actin-like ATPase domain 136 255 IPR043129 -
Vivi1g03384 474 SUPERFAMILY Actin-like ATPase domain 252 461 IPR043129 -
Vivi1g03384 474 Gene3D Actin; Chain A, domain 4 285 367 - -
Vivi1g03384 474 PANTHER ACTIN 180 466 IPR004000 -
Vivi1g03384 474 Pfam Actin 211 460 IPR004000 -
Vivi1g03384 474 Gene3D - 29 110 - -
Vivi1g03384 474 Gene3D - 242 439 - -
Vivi1g03384 474 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Vivi1g03384 474 SMART fbox_2 46 86 IPR001810 GO:0005515
Vivi1g03384 474 Pfam F-box-like 44 85 IPR001810 GO:0005515
Vivi1g03384 474 MobiDBLite consensus disorder prediction 15 36 - -
Vivi1g03384 474 Gene3D - 138 466 - -
Vivi1g03384 474 CDD NBD_sugar-kinase_HSP70_actin 138 282 - -
Vivi1g03384 474 SUPERFAMILY F-box domain 38 98 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03384 Vivi-Chr1 72827573 72835322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03384 184 457 Cytoskeleton Gene Families AT3G12110 31.338 1.46e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03384 K16616 - gmx:100804254 724.546