Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03358 ATGGATCCTGGTCGCTATGCACTGCATCAAGGCTGGGATAATAACAGCGCTCTGGAGGGTTATGGTGCGGTCCATGAGCCAAATTTTCGGGTCGGCGACTCTTATGACGAAAGAAGGTTTATAGATGAAAGATATCCCAGGGATGCTGTATACCAGAGAAATAATTTCCATCGAGATGTTTTGGATCGGGAGGCCTACTTGCCACCAGGACCTGCTGTTGGTCAATGGAGTCAATCCAAGCGAAGGGGTTATGATGAAGATTATCCCCTTGAAAGGGAATCTAGACGTTTTCAGAGACCTTACCACGAACCATACAATCAAATGGAAGGTTTCAGGGATCGTGAGATTGACATTTACCCGGAGTATGATAAGTTTCGAGATGGTTATACCAACTATGGTGATCGAGGATATGACAAACCTGCTAGACTTGCAGGGCATGACCGTGATGATTATGCGTATGATGATTATGGCCACAAGTCCCGTGTTTCGCATCATCGAAGGGAGGATAGCCATGAGAGGAATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGATGGAAAAAAAGATAGTAATAGGAGGCGACGTGAATCACACGATCGAGAACGAGACAAGAGATGTCTCAGTAAGGAAAAAGATCCAAGTCCCCAAAGGAAACATGAGCGTTCTCGATCGCGTTCACGATCCCATTCTCGGTCCCGATCACACTCCCGTTCTCATTCTCACTCTCGCTCCCGTTCCCAATCTCGTGGTTATGATGATAATCCAAAATCTAGGTCTCCTCGAGGTCGAAGCCATGGTCGGAGTTATCGGGAAGACAGCTATGTTGATAACCGATATGATAGAAGTGAAAGACGCAGGGACCGTGATGATAAACGTCAGCGGGAACATTATTCTGTGGCACCATCTGCAACTATTGTTGTGAAAGGTCTTTCACAGAAGACGACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGTCCCCTTCGTCATGTCCGTGTTATAAAGGAGAGACATTCTGGCATCTCCCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAGCTAGGAGATGAAGGTCTTGTTGTGGATGGCAGGAAGCTTTTCTTCGAATATAGTAGCAAACCAACCGGAAGTGCAGGTCCAGACGGAACTATGAAATCAGGTCATAGTCATAAGAGCATTACAATACCATCTGATTGGATGTGCACTATATGTAGCTACATCAATTTTGCACGCCGGACTTCTTGCTATCAGTGTAATGAACCACGCACTGATGATGCTCCTGCAGCAGACATTTCTTTATCAAATTCCTCAGCCTTAGGAAAGAAAGGTTTGGAGGCAGGTCCAACTCATGTATTGGTTGTCCGTGGATTGGATGAAAATGCGGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATCAAGGATCTTCGGCTTGTGAGAGACAAGTTTACTCATGTCTCGAGGGGATTCGCATTTGTACATTTTTATTCGGTAGAGGATGCTACCAAAGCTCTTGACTCAACAAATGGAACCGCCCTTGAGAAGAATGGACAGATTCTAAGAGTAGCATATGCAAAAAGCATACTGGGCCCTGGATCAGGAGCGTCAGGAACTTCACAGTCAAGCAGTCTTGCAGCTGCAGCTATTGAGGCTGCAACATTTTCCCAACAGTATGATTCTGTCGGATGGGCTCCCAAAGAATACAATCCAGATGACAAACAATCTAATGGTCCTGAGCAGACTGGTACTGATGCTGGTGCACCGCAATCAGGCTTTGTTTGGGATGAAGCATCTGGCTATTACTATGACGCCACTTCTGGGTTTTATTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATCTGGTATTCATACGACCACCATACTCAGCAGTATATCCCTTGCACTGATCAAAATCAGAATAAATCATCTAATAACGAGTCTGAACCTTCAAAGGCTCCTGATGGTTCAAGCACTAAAAAAGTAGTGATTTCTGCACCTGCTACTACTGTTACTTCAAATGAGAAGCCAGCTTCACTGGCAGATGCTGTTCAGGCTGCAGCAGCAGCTGCTTTAGCTGCAGAGAAGAAAGAGAAAGAAAAATCGAAGGAGATAAAACTTGCTTCAAAAAGCAGTATTCTAGCAAACAAGAAAAAAATGAACAATGTCCTGACAATGTGGAAGCAGAGGAGTCATGAGGGACAGGCTACTCGAGTAGCACTGGAGGACAATCAGTTACCTGGTTCTGTTGAGGATAAGTCATATTCTTCTGCACATTCTGCAAAGAATAAATTAAAAACTGAGACAGCACCAAGGGAAATTAACGTGTCTAATCTGGGTGGTCACACAACTGCACAGGTTGCTGCTATTGACTCTCAACCACAGCCACGGCCCTTCAGTAATAGCCTCGGGGGCACTCTGATGGGGGTTATAAGGGGCTCAGGACGAGGGGTTGTTAGATCAGATACTTATTCTGGCTCTACGTCTGCCACACCATCTATGTCCGCTTCTTCAGCAAATGTTGATGCCCAGACCACTCCTTTTAAAACAGATGTATCTTCCCTGGGTTCATATACACCATCAGTGTCTGTTGGAAGTGGACGAAGAAGGTTTTCAGAAATGCCACTCTCTACTTCAACTCATAAGGAACAATCTCAAACAACAACCTACAGAGATCGGGCAGCTGAGAGAAGAAGTTTGTATGGCTCGTCATCTTCAGTTGGCAATGATTTGTCTGACCTTGAAATTGGGGATTCAAGTAAGATTGCTTAA 2832 0.447 MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGDSYDERRFIDERYPRDAVYQRNNFHRDVLDREAYLPPGPAVGQWSQSKRRGYDEDYPLERESRRFQRPYHEPYNQMEGFRDREIDIYPEYDKFRDGYTNYGDRGYDKPARLAGHDRDDYAYDDYGHKSRVSHHRREDSHERNYDHGRHSYDSDYERDGKKDSNRRRRESHDRERDKRCLSKEKDPSPQRKHERSRSRSRSHSRSRSHSRSHSHSRSRSQSRGYDDNPKSRSPRGRSHGRSYREDSYVDNRYDRSERRRDRDDKRQREHYSVAPSATIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERHSGISRGFAFIDFPSVGAAQGMMDKLGDEGLVVDGRKLFFEYSSKPTGSAGPDGTMKSGHSHKSITIPSDWMCTICSYINFARRTSCYQCNEPRTDDAPAADISLSNSSALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDSTNGTALEKNGQILRVAYAKSILGPGSGASGTSQSSSLAAAAIEAATFSQQYDSVGWAPKEYNPDDKQSNGPEQTGTDAGAPQSGFVWDEASGYYYDATSGFYYDGNTGLYYDGNNGIWYSYDHHTQQYIPCTDQNQNKSSNNESEPSKAPDGSSTKKVVISAPATTVTSNEKPASLADAVQAAAAAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQLPGSVEDKSYSSAHSAKNKLKTETAPREINVSNLGGHTTAQVAAIDSQPQPRPFSNSLGGTLMGVIRGSGRGVVRSDTYSGSTSATPSMSASSANVDAQTTPFKTDVSSLGSYTPSVSVGSGRRRFSEMPLSTSTHKEQSQTTTYRDRAAERRSLYGSSSSVGNDLSDLEIGDSSKIA 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03358 943 MobiDBLite consensus disorder prediction 580 606 - -
Vivi1g03358 943 SUPERFAMILY RNA-binding domain, RBD 462 549 IPR035979 GO:0003676
Vivi1g03358 943 CDD OCRE_SUA_like 602 655 IPR035623 -
Vivi1g03358 943 SUPERFAMILY Ran binding protein zinc finger-like 405 439 IPR036443 -
Vivi1g03358 943 Gene3D - 407 439 - -
Vivi1g03358 943 MobiDBLite consensus disorder prediction 837 943 - -
Vivi1g03358 943 SMART zf_4 411 435 IPR001876 -
Vivi1g03358 943 MobiDBLite consensus disorder prediction 655 682 - -
Vivi1g03358 943 MobiDBLite consensus disorder prediction 154 223 - -
Vivi1g03358 943 Pfam OCRE domain 606 654 IPR041591 -
Vivi1g03358 943 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 544 IPR000504 GO:0003723
Vivi1g03358 943 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 387 IPR000504 GO:0003723
Vivi1g03358 943 SUPERFAMILY RNA-binding domain, RBD 224 385 IPR035979 GO:0003676
Vivi1g03358 943 MobiDBLite consensus disorder prediction 919 933 - -
Vivi1g03358 943 MobiDBLite consensus disorder prediction 224 248 - -
Vivi1g03358 943 PANTHER RNA-BINDING PROTEIN 203 922 - -
Vivi1g03358 943 MobiDBLite consensus disorder prediction 249 301 - -
Vivi1g03358 943 MobiDBLite consensus disorder prediction 154 301 - -
Vivi1g03358 943 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 466 531 IPR000504 GO:0003723
Vivi1g03358 943 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 368 IPR000504 GO:0003723
Vivi1g03358 943 ProSiteProfiles Zinc finger RanBP2 type profile. 409 438 IPR001876 -
Vivi1g03358 943 MobiDBLite consensus disorder prediction 840 905 - -
Vivi1g03358 943 Gene3D - 286 400 IPR012677 -
Vivi1g03358 943 Gene3D - 446 569 IPR012677 -
Vivi1g03358 943 CDD RRM1_RRM2_RBM5_like 462 542 - -
Vivi1g03358 943 ProSitePatterns Zinc finger RanBP2-type signature. 413 432 IPR001876 -
Vivi1g03358 943 SMART rrm1_1 308 383 IPR000504 GO:0003723
Vivi1g03358 943 SMART rrm1_1 465 540 IPR000504 GO:0003723
Vivi1g03358 943 MobiDBLite consensus disorder prediction 655 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03358 Vivi-Chr1 72534398 72541135 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03358 306 528 Eukaryotic Initiation Factors Gene Family AT2G36660 24.701 1.78e-09 59.7