Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03334 ATGGAGAACACAAAATCCTCAGATCAAGTTGTTCTCTTCCTTGACCAACAACAAAACCCTAAACCTTCCACAATGGACACTGAAACTCACCACAACAACAACAACACCGAACCTCATCAAGACAAACCCAAACACCCCTCAAGAGTCAAAACTCTTACCCGTCTAACCTTCTCCAAACCCAAATCCAGAATCTTTGAATACAACCATACACCTCGCAACAAACTACCTACCTTTGAAGAAGAAGAAAACACTCAACTACCTTCCTACAAAGTCTCTTCCGACGAAGAAGACGACTACGAATGGAAGGAACAAGAATCAGACGACGAAGACGACGACAACGAAGAAGATCCAAAGTTAAACAAAAAGAAAAAGTTTAGAGTGAAGTGGAGGCTAGTTTTTGAATGGATACTATTTATAAACATATTAACATGCTTGGTTTGTTCTCTCGTAATAAAAAAAATAAAAAACATGCATTTATTAGGGTTAGAAGTTTGGAGATGGTGTTTAATGGCAATGGTAACATTTAGTGGCCGTTTATTTTCAAGTTGGTTAGTTAGTTTCACCGTTCTCATCATAGAAAGAAACTTCATGCTAAGAGAAAAAGTTCTATACTTCATCTACGGTTTAAGAAACAGCATTCGTAATTGTCTATGGCTAGGTCTTGTTTTATTGTCCTATTGGAGTGTAGTTTTCGATGATGTCCAAAAGAAAAACCATAAGTTCCTCAACAAGATGTTCCAAGCACTTGTTGCTGTTCTAGTAGGTGCAACAATATGGTTAGTGAAAATTGTTTTGGTGAAAATGCTAGCTTCATCATTTCATGTGACAACATATTTTGATAGGATGAAGGAGAGTGTTTTTCATCATTATGTGTTGGACGCGTTGTCGGGTCCGGCGATGGAGTACGGGGAGGAGATATCGAAAGAGCATCATTTGACGGGGTCGAAGACGATGCCGGTGGGGGCGGGGAGGTGGAAGAAGATGAAGAGATTTGGGTCGAGGAGGATTGACATGGAGAAGCTGAGGAAACTTAGTATGGAGAGTAGTGGGTCGGTTTGGAGTGTTAAGAGGCTTGTTAACTATGTTAGGTCTTCTGGGTTGTCGACTATTTCTAGGACTGTTGATGATTTTGGGAATAAAGAGAGTGAGATTAGTAGTGAATGGGAAGCTAGAAGTTGTGCTCAGAAGATTTTTAACAATGTTGCTAAACCTGGTGCCAAGTATATTGAAGAGGTGGATCTCATGAGATATTTGAAGAGGGTTGAGATACATACCATATTTCCACTCTTTGAAGGAGCTCTTGAAACTGGAAAAATTAGCAGATCTTCATTTAGAAATTGGGTGATTCGAGCTTATTATGAAAGAAAAGCCCTAGCACAATCACTCAATGATACAAAAACAGCAGTGCAACAACTTCACAAATTAGCAAGTGCAGCTGTGTGTGTGATAATAATAATTGTGACACTTTTGGTGATGGAAGTGGCAACAATCAAGATAATACTATTTTGTATCACACAAACAGTTTTAATAGGAGTTGCTTTTCAAGGCACTTGCAAAACTGTCTTGGAAGCTATTATCTTTGTCTTCATCATGCATCCTTTCGACATAGGAGACCGTTGTGTCATTGATGGTATTCAGATGATTGTGGAAGAGATGAATATATTGACGACCGTGTTTCTTCGATATGACAATGAGAAAATTTACTACCCTAATGCGGTCTTACTCACTAAGCCTATAAGCAACTTTTATCGAAGTCCCGAGATGCGTGATTCAATCGATTTCACCATTGATGTTACAACTCCTATAGAGACTATCATTGCACTCAAGAAATCAATACAAATGTACATTGAAAGCAAGCCAAAGTATTGGAATCCAAAGCACACTGTGATGGCAAAACAAATAGATCAAGTGGACAAATTGAAGCTGTGTTTAAGTGTGCAACACACCATTAACCATCAAAACTATGGTGAGAGAAGCATTAGGATATCAGAACTTCTCATGGAAATGAAAAAGATGTTTGAGATTCATCGTATCAAGTACCACCTTCTTCCTCAAGAAATTCATCTCACTCAAATGAATATTGGAGATGGGAGAGCTTTGTTTCATTCATGA 2112 0.3854 MENTKSSDQVVLFLDQQQNPKPSTMDTETHHNNNNTEPHQDKPKHPSRVKTLTRLTFSKPKSRIFEYNHTPRNKLPTFEEEENTQLPSYKVSSDEEDDYEWKEQESDDEDDDNEEDPKLNKKKKFRVKWRLVFEWILFINILTCLVCSLVIKKIKNMHLLGLEVWRWCLMAMVTFSGRLFSSWLVSFTVLIIERNFMLREKVLYFIYGLRNSIRNCLWLGLVLLSYWSVVFDDVQKKNHKFLNKMFQALVAVLVGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYVLDALSGPAMEYGEEISKEHHLTGSKTMPVGAGRWKKMKRFGSRRIDMEKLRKLSMESSGSVWSVKRLVNYVRSSGLSTISRTVDDFGNKESEISSEWEARSCAQKIFNNVAKPGAKYIEEVDLMRYLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAAVCVIIIIVTLLVMEVATIKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFIMHPFDIGDRCVIDGIQMIVEEMNILTTVFLRYDNEKIYYPNAVLLTKPISNFYRSPEMRDSIDFTIDVTTPIETIIALKKSIQMYIESKPKYWNPKHTVMAKQIDQVDKLKLCLSVQHTINHQNYGERSIRISELLMEMKKMFEIHRIKYHLLPQEIHLTQMNIGDGRALFHS 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03334 703 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 18 692 IPR016688 -
Vivi1g03334 703 MobiDBLite consensus disorder prediction 1 117 - -
Vivi1g03334 703 PIRSF Memb_At2g17000 3 700 IPR016688 -
Vivi1g03334 703 Gene3D - 533 582 IPR023408 -
Vivi1g03334 703 MobiDBLite consensus disorder prediction 1 31 - -
Vivi1g03334 703 MobiDBLite consensus disorder prediction 65 79 - -
Vivi1g03334 703 MobiDBLite consensus disorder prediction 98 114 - -
Vivi1g03334 703 MobiDBLite consensus disorder prediction 32 48 - -
Vivi1g03334 703 SUPERFAMILY Sm-like ribonucleoproteins 524 582 IPR010920 -
Vivi1g03334 703 Pfam Mechanosensitive ion channel 475 679 IPR006685 GO:0016020|GO:0055085
Vivi1g03334 703 FunFam Predicted mechanosensitive ion channel 533 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03334 Vivi-Chr1 72261209 72265440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03334 18 693 Mechanosensitive Ion Channel Family AT5G12080 42.045 0.0 551