Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03327 ATGGCGTCGAATGAGAATGTGCCGGTTCGCGAGTTTTGCGCTAATGGAAGCTGCATGAACACAAAGGAAGTTGAAGCTAAGCTTGATGAAGGAAATATCCAAGACGCTGAAACTGCATTGCAAGAAGGTTTATCTCTTAGTTCCGAGGAAGCAAGAGCTCTACTCGGAAAATTTGAGTATCAAAGAGGTAATGTCGAGGGCGCGCTTCGTGTGTTTGAAGGGATCGATCTTACAGAAGCCATACAGCGACTGCAAACTACCCTTTCGGAAAAGCCACCTATCAAGAAAGGTTCTTCTCGTGCGGAATCACCTTCTTCGGTATCTCAGCATGCTGCTAGTATGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTTTACAAAAACTAGGGAAATTTAATGAAGCTGCTAATGAATGCAAAGAAGTTCTAGATGCTGTTGAGAAGATATTCGGTCAGGGTATACCAGATACTCAAGTGGACAATAGATTGCAGGAGATTGTAAGCTGTGCTGTAGAGCTTCTTCCAGAGCTTTGGAAACAAGCCGGTTGCTATCATGAGGCAATAACTGCTTACAGGCACGCTCTTCTCAGTCAATGGAACCTTGATAATGATTGCTGTGCGAGAATTCAGAAAGCGTTTGCAGTATTTTTGCTTTACAGCGGGGTGGAGGCAAGTCCGCCTAGTTTTTCCGTTCAGATTGAAGGGTCTTTTGTACCAAAAAATAATCTGGAAGAGGCGATTCTTCTTCTTATGATTCTTTTAAGGAAGTTTAGCCTAGGCAAGATAAAATGGGATCCTTCGATTATGGAACACCTAACTTTTGCACTTTCAGCATGTGGCGAGACATCTATTTTGGCGAAACAATATGAAGATTTGATGCCTGGTGTATATCATCGTATTGACCGTTGGAATTCTTTAGCTCTATGTTTTAGTGCGGATGGACAAAATAAAAGTGCTTTGAATCTGCTAAGGAAGTCTTTGCATAAACACGAGCGACCGAACGATGTGATATCGTTATTATTGGCTGCAAGGATTTGCAGTGAGGGTTCTCATCTTGCTGCAGAGGGAGCAGGGTATGCACAGAGGGCAATCGAGAATGCTCGGGGCTTAAACGAGCATTTGAAAGGCGTTGGTCTTCGGATGCTTGGACTTTGCCTTGGAAAGCAAGCTAAGGTTGCTGCATCCGATTTCGAGAGGTCTATGCTTCAGTCAAAAGCTTTGCAGTCATTAGAAGAGGCACTTAGATTAGAGCAAAACAATTTTGATCTAATCTTCGAATTGGCTATTCAATATGCCGTGCACCGAAACTTGGCTGTTGCTTTACGTTATGCCAAGGAGTTCTTCGACAAAACTGGTGGCTCCAAATTGAAAGGTTGGAGATTACTTTCTCTGGTTTTGTCTGCACAGAAAAGATTTTCAGAGGCTGAAATGGTGACTGATGCTGCTATAGATGAGACCGCAAAATGGGAGCAGGGGCCTCTACTCAGGTTAAAAGCCAAGCTGAAGATCGCTGAACTACGACCAATGGATGCTATTGAGATTTACCGGTACCTTCTCGCATTGGTTCAAGCCCAGAAGAAATCCGCTGGAGCTCAAAAACTTAGTTCACAGGATGCGGAGGATCAAATAAACGAGTTTGATGTTTGGCACGGTCTAGCAAATTTATATGTAAGCCTTTCGCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCTAGAGAGTTGAAGCAATACTCTGCGGCAACAATACAAACCGAAGGTGTCGTGTTTGACGGCCGTGGACAATACAACGAAGCACTTGCGGCTGCTGCTAATTCTGTCCCAATTGAACCAAACCATGTTCCAAGCAAGATCTTGATGGCTTCTTTGATACTTAAAAATGGTTCCAAAGCATTACCTGTTTGTAGGAGCTTACTTTCTGATGCACTAAGAGTAGAACCAACTAACCGCAGTGCTTGGTATTACCTCGGATTAACTCACCGGGATGATGGTCGAATAGGTGATGCTGCTGACTGCTTCCAAGCAGCTTCAATGCTTGAAGAATCTGATCCCGTTGAAAGCTTTAGCTCTATGCTTTGA 2079 0.4367 MASNENVPVREFCANGSCMNTKEVEAKLDEGNIQDAETALQEGLSLSSEEARALLGKFEYQRGNVEGALRVFEGIDLTEAIQRLQTTLSEKPPIKKGSSRAESPSSVSQHAASMVLEAIYLKAKSLQKLGKFNEAANECKEVLDAVEKIFGQGIPDTQVDNRLQEIVSCAVELLPELWKQAGCYHEAITAYRHALLSQWNLDNDCCARIQKAFAVFLLYSGVEASPPSFSVQIEGSFVPKNNLEEAILLLMILLRKFSLGKIKWDPSIMEHLTFALSACGETSILAKQYEDLMPGVYHRIDRWNSLALCFSADGQNKSALNLLRKSLHKHERPNDVISLLLAARICSEGSHLAAEGAGYAQRAIENARGLNEHLKGVGLRMLGLCLGKQAKVAASDFERSMLQSKALQSLEEALRLEQNNFDLIFELAIQYAVHRNLAVALRYAKEFFDKTGGSKLKGWRLLSLVLSAQKRFSEAEMVTDAAIDETAKWEQGPLLRLKAKLKIAELRPMDAIEIYRYLLALVQAQKKSAGAQKLSSQDAEDQINEFDVWHGLANLYVSLSHWKDAEICLQKARELKQYSAATIQTEGVVFDGRGQYNEALAAAANSVPIEPNHVPSKILMASLILKNGSKALPVCRSLLSDALRVEPTNRSAWYYLGLTHRDDGRIGDAADCFQAASMLEESDPVESFSSML 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03327 692 Pfam Tetratricopeptide repeat 25 73 - -
Vivi1g03327 692 Gene3D Tetratricopeptide repeat domain 241 453 IPR011990 GO:0005515
Vivi1g03327 692 SUPERFAMILY TPR-like 116 441 IPR011990 GO:0005515
Vivi1g03327 692 Gene3D Tetratricopeptide repeat domain 454 613 IPR011990 GO:0005515
Vivi1g03327 692 SUPERFAMILY TPR-like 510 680 IPR011990 GO:0005515
Vivi1g03327 692 Gene3D Tetratricopeptide repeat domain 620 689 IPR011990 GO:0005515
Vivi1g03327 692 Gene3D Tetratricopeptide repeat domain 21 198 IPR011990 GO:0005515
Vivi1g03327 692 PANTHER PROTEIN NPG1 3 689 IPR043376 -
Vivi1g03327 692 MobiDBLite consensus disorder prediction 88 107 - -
Vivi1g03327 692 SMART tpr_5 300 333 IPR019734 GO:0005515
Vivi1g03327 692 SMART tpr_5 116 149 IPR019734 GO:0005515
Vivi1g03327 692 SMART tpr_5 580 613 IPR019734 GO:0005515
Vivi1g03327 692 SMART tpr_5 546 579 IPR019734 GO:0005515
Vivi1g03327 692 SMART tpr_5 650 683 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03327 Vivi-Chr1 72191499 72194940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03327 5 692 Calmodulin-binding Proteins AT2G43040 69.653 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03327 K21843 - gmx:100811897 1109.75