Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03325 ATGGGCGATAATGGTGATGATCCACCTTTGTTCAGTAGCAAATTTGGGGTGGTACTCATTGCCATGGGCTCAGCTAGTTTTGTAGTAACAATGTACCATCTCATTGTCATTTGCTGCCAAAACTCATCTCAACAAGCCCAGCGGCACGACCAACCGACGATACAAACACCGAGCGGCGAAGAGGGAGGTTTCGTCTCACATCAAATTCCATCTCACAAATATGAAAAGAAAAACAATGATGATGAAAGTGTGACTTGTACTGTATGCTTGGGAGACTTTGAGGAGGGTGAAGAGTTAAGGACTATGCCTTCTTGTATGCACTCTTTTCATGTACCATGCATAGATATGTGGCTCCATTCACATCCTAATTGTCCTGTTTGTCGCGCCGATGCCACGCCTTCTCCGGTGATGCCTCGCGGATCACCGGAGGTTGGATCTGTGGAGGTGAATGTAGATCAAGGCTTAGATATGGTTCAAGTTATTGTTGTCCGATAA 495 0.4566 MGDNGDDPPLFSSKFGVVLIAMGSASFVVTMYHLIVICCQNSSQQAQRHDQPTIQTPSGEEGGFVSHQIPSHKYEKKNNDDESVTCTVCLGDFEEGEELRTMPSCMHSFHVPCIDMWLHSHPNCPVCRADATPSPVMPRGSPEVGSVEVNVDQGLDMVQVIVVR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03325 164 CDD RING-H2_EL5-like 86 128 - -
Vivi1g03325 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 135 IPR013083 -
Vivi1g03325 164 Pfam Ring finger domain 85 128 IPR001841 -
Vivi1g03325 164 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Vivi1g03325 164 SMART ring_2 86 127 IPR001841 -
Vivi1g03325 164 SUPERFAMILY RING/U-box 68 134 - -
Vivi1g03325 164 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 17 131 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03325 Vivi-Chr1 72139085 72139579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03325 17 132 C3H Transcription Factor Family AT5G17600 33.824 4.83e-21 86.3