Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03316 ATGAAGATTACAAAAATGGAGAATTTGTTAAGTCTTGTAATATGCACATTGCTGTTAGTTAAAGCAGCTGAAGGTGTTACTGTGCCAATCACTTATGTTCAAAGTGCAGTACCAAAAGGAGCTGTTTGTTTGGATGGGAGTCCACCAGCTTATCACTTTGATAAGGGATTTGAAGCTGGAATTGATAACTGGATTGTTCACTTTGAGGGAGGAGGATGGTGTAACAATGCCTCTACTTGCCTTGACCGTAGGGACACTCGATTAGGATCGTCGAAGAAAATGGATACAACACTTTCCTTTTCGGGATTTTTTAGTAATGGAAAAAAGTTTAATCCAGATTTCTACAATTGGAACAGAATCAAGGTTAGGTATTGTGACGGTTCGTCATTTACCGGTGATGTTGAAGCTGTTGATCCAGCTACCAATTTGCACTACAGAGGAGGAAGAATATTTGTTGCTGTCATTGAGGATTTACTAGCAAAGGGAATGAAAAACGCTAAAAATGCAATTCTATCTGGATGTTCAGCTGGAGGATTGACTTCTATTTTACAATGCGATCGCTTTAGAACTTTGCTGCCTGCAGCAGCGAAAGTTAAATGCGTCTCAGATGCTGGTTACTTTATCAATGCAAAGGCTGTCTCTGGAGCACAACACATTGAACAAATCTACAGCCAAGTTGTTCAAACACATGGCTCCGCCAAGAATTTGCCTTCATCTTGCACTTCAAGACTTCCACCAGGGCTGTGTTTTTTCCCACAAAACGTGGCCGCACAAATCAGTACACCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGATTAAGAATATTTTGGCACCTGGTGTTGCTGATCCCCATGGCACTTGGCGTAGCTGCAAGCTTGATATAAAAGATTGCTCTTCTAATCAATTAACCACAATGCAAGGTTTCAGGACAGAATTCTTAAAGGCAATTAGTGTGGTTAGTAACTCTCCATCTAAAGGAATGTTTATCGACGGTTGCTATTCCCACTGCCAAACTGGAATGCAGGAAACATGGATGAGAAATGACTCTCCAGTGCTTGCAAATACAACAATAGCAAAGGCTGTGGGAGATTGGTATTTTGAGAGAAAGGGTTTTCATCAGATAGATTGTTCTTATCCTTGCAACCCTACTTGTCATAACCGTGTCTTTGAACAGAATTAA 1188 0.4066 MKITKMENLLSLVICTLLLVKAAEGVTVPITYVQSAVPKGAVCLDGSPPAYHFDKGFEAGIDNWIVHFEGGGWCNNASTCLDRRDTRLGSSKKMDTTLSFSGFFSNGKKFNPDFYNWNRIKVRYCDGSSFTGDVEAVDPATNLHYRGGRIFVAVIEDLLAKGMKNAKNAILSGCSAGGLTSILQCDRFRTLLPAAAKVKCVSDAGYFINAKAVSGAQHIEQIYSQVVQTHGSAKNLPSSCTSRLPPGLCFFPQNVAAQISTPIFFVNAAYDSWQIKNILAPGVADPHGTWRSCKLDIKDCSSNQLTTMQGFRTEFLKAISVVSNSPSKGMFIDGCYSHCQTGMQETWMRNDSPVLANTTIAKAVGDWYFERKGFHQIDCSYPCNPTCHNRVFEQN 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03316 395 PANTHER NOTUM-RELATED 15 389 IPR004963 GO:0016787
Vivi1g03316 395 Pfam Pectinacetylesterase 23 372 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03316 Vivi-Chr1 72065438 72068893 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03316 5 392 Carbohydrate Esterase AT4G19420 57.683 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03316 K19882 - gmx:100781246 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03316 1 72065438 72068893 Vivi1g03316 1 72065438 72068893 ECH
Vivi2g02605 2 117519580 117525028 Vivi1g03316 1 72065438 72068893 PCT