Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03311 ATGGGATCCAATAGTAGCAAAGCCACTTCCTCTACAACTTCTTCTTCAAGGAATTTCAGGAAGAGGAGTCGCTCTAAGGCTCTCAGAGGGTTTCATTCTTATTGTCTTGGAACTAGTTCTGGATCTCGAGACAGTGATAATGAAGACCAGGTTTGTGATAATAATAAAGTAGATGACAATGATGTTACATATGCTGATGGCAATCTATCAGACTCAGATGAGGTGAAATCGAAATCTCTAAGAAAAGTTAAAGCTGGTGAGAGTGACAATACTTGTATGCCTAACATCAATCTTGATGAGTGGAGTGAAACAAGGATCCGCGATATTTCGTCTGGAAGTCGCGCCAGATCTGTTCACGATTCTTCAACTCATTCGTTGAATCCAACAAGTCGATTCCTCTCTCGACTTAGGAGATTTACTAGTTCAAGGTCATCAAGGCCTTGTCCGGTTTCTTCTCCAAGTTTATCAATGTTTGACAACGATGATGATGCATCAGGATCTGGTTTGCCTTGTTGCAACATGCAGAGAAATCCCAGTTGTGGCATTGGTGCAAGAGATGAGTTGGATGTGAACTTATTTTCTTCGAGAATTCAAGGAGACACGGAAAGTATTGAGACTAGACATATAGATCGACAAAAGAGAGTTCGAGAACCAGTTGAACATAAAGTTCGTTTTAGTCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTTAGTCGATCAACATCATCTAACCTTACGCCATTCCCTCAACAACAAGAGAGAGAACTGAGAGATGATAGTCAGAATACTCGAAGGCAAGCAATGGAGCCAGGTTCAAGAGTTTCACCATCAGATCACAGTGCCATTAGTTCTTCTACATCTAGTATGTCTAACTCCATGTTTAGCAATCAAAACTATGAAGTTGAGACCTCACAATTGCGAGAAGGTAGGTATCAGGATTTACTAGAGCATAGATCCAATTTCCTTGAACGCGGAAGAAGAATACGGTCACAGGCCCGTTCTCTTCAGCGATTAGGTAGCCGGTTTGAAAATCAGTCCGCACATGGGAGATCATGTATCTTGTCTGGTCAACATAGGAGTGGTCGTTGTATGTGCCGATTCAGAAATCGTGACACAAATTCAAATGATGATCCTGGTGCTAGAGCTAGCATATCTAGAATTGTTGTACTTGCAGAAGCTTTATTTGAGGTTCTCGATGAAATCCACCAGCAATCCGTGGTTTTATCTTCCAATCCGTCCGCCTCTTCTCTTGGATGTGTTCCCGCACCTATCAATATCGTGGAGTCTTTACCTGTCAAGCTATACGAGAAGTTGCATAAACATCAAGAAGATGCTACACAATGCTATATATGCCTTGTGGAGTATGAGGACGGAGACAGCTTGCGAATTCTTCCTTGCCATCATGAGTTTCATAGGACATGTATAGACAAGTGGTTGAAGGAGATTCACAGGGTATGCCCGCTATGTCGGGGCAACATCTGCATTTCTGATTCAGAATTTTAG 1509 0.4215 MGSNSSKATSSTTSSSRNFRKRSRSKALRGFHSYCLGTSSGSRDSDNEDQVCDNNKVDDNDVTYADGNLSDSDEVKSKSLRKVKAGESDNTCMPNINLDEWSETRIRDISSGSRARSVHDSSTHSLNPTSRFLSRLRRFTSSRSSRPCPVSSPSLSMFDNDDDASGSGLPCCNMQRNPSCGIGARDELDVNLFSSRIQGDTESIETRHIDRQKRVREPVEHKVRFSRTLSVGRLRDRVLSRSTSSNLTPFPQQQERELRDDSQNTRRQAMEPGSRVSPSDHSAISSSTSSMSNSMFSNQNYEVETSQLREGRYQDLLEHRSNFLERGRRIRSQARSLQRLGSRFENQSAHGRSCILSGQHRSGRCMCRFRNRDTNSNDDPGARASISRIVVLAEALFEVLDEIHQQSVVLSSNPSASSLGCVPAPINIVESLPVKLYEKLHKHQEDATQCYICLVEYEDGDSLRILPCHHEFHRTCIDKWLKEIHRVCPLCRGNICISDSEF 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03311 502 ProSiteProfiles Zinc finger RING-type profile. 450 492 IPR001841 -
Vivi1g03311 502 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 167 - -
Vivi1g03311 502 SMART ring_2 450 491 IPR001841 -
Vivi1g03311 502 MobiDBLite consensus disorder prediction 278 297 - -
Vivi1g03311 502 MobiDBLite consensus disorder prediction 240 297 - -
Vivi1g03311 502 MobiDBLite consensus disorder prediction 37 73 - -
Vivi1g03311 502 SUPERFAMILY RING/U-box 428 497 - -
Vivi1g03311 502 MobiDBLite consensus disorder prediction 46 60 - -
Vivi1g03311 502 FunFam Putative RING zinc finger domain superfamily protein 420 497 - -
Vivi1g03311 502 MobiDBLite consensus disorder prediction 1 18 - -
Vivi1g03311 502 Pfam Ring finger domain 449 492 IPR001841 -
Vivi1g03311 502 MobiDBLite consensus disorder prediction 1 25 - -
Vivi1g03311 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 417 496 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03311 Vivi-Chr1 71995905 71998696 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03311 139 499 C3H Transcription Factor Family AT5G45290 53.388 7.49e-106 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03311 - - cam:101492704 610.912