Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03262 ATGACTCGCTCTCTTAGAACATTACAATCCATTTCCTCCGCCGCACCTCCGCCCGACTCCACCGCCTCTTTAGAATCCGACTTCGTCGTCATCCTCGCCGCTCTCCTCTGCGCTCTCATTTCCGTCGTCGGCCTCACCGCCATCGCCCGATGCGCTTGGCTCCGCCGCGGCCCCGCCGCCGGAGCCTCCCCGACCACCGCCGTTGTCAACAAAGGTCTCAAAAAGAAAGTTCTCAATTCACTTCCGAAATTCACCTACCTCGCCGACACTCCCGGAAAATGGATAGTCTCGTCGGAGTGCGCCATTTGTCTCTCGGAGTTCACCGCTGGTGAAGAGGTTAGAGTGCTTCCCCAGTGCGGTCACGGCTTCCACGTGGCGTGTGTAGACACGTGGCTTGGGTCTCACTCCTCGTGTCCTTCTTGCCGTGCTCCTTTCGCCGTCGCTAGGTGTCAGAAATGCGGCCTATACCAACCAAATCCTGCCGGAGAAGTCACTGGAGAAGTCACCGGAGAAACAGAGCCGAAAACCACCAGCGACGAGAATGTAGAAGTTGTTGTTGTGAATTCCAATTGTGTTAGCGACGGCGTTGATAGACATAGCCACGGTGGTTATAATGGCTTTTTGCCGTAA 630 0.5603 MTRSLRTLQSISSAAPPPDSTASLESDFVVILAALLCALISVVGLTAIARCAWLRRGPAAGASPTTAVVNKGLKKKVLNSLPKFTYLADTPGKWIVSSECAICLSEFTAGEEVRVLPQCGHGFHVACVDTWLGSHSSCPSCRAPFAVARCQKCGLYQPNPAGEVTGEVTGETEPKTTSDENVEVVVVNSNCVSDGVDRHSHGGYNGFLP 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03262 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Vivi1g03262 209 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Vivi1g03262 209 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1g03262 209 SMART ring_2 100 141 IPR001841 -
Vivi1g03262 209 MobiDBLite consensus disorder prediction 1 22 - -
Vivi1g03262 209 SUPERFAMILY RING/U-box 90 147 - -
Vivi1g03262 209 Pfam Ring finger domain 99 142 IPR001841 -
Vivi1g03262 209 CDD RING-H2_EL5-like 99 142 - -
Vivi1g03262 209 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 14 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03262 Vivi-Chr1 70882562 70883523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03262 1 153 C3H Transcription Factor Family AT1G20823 59.036 9.92e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03262 - - gmx:100787383 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02734 2 122607356 122608303 Vivi1g03262 1 70882562 70883523 PCT