Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03257 ATGAAACTCCTCTTTCTCTTCCGCATTTCCTTCTTCCTCTTCATCCTCAACCAACTCTCCTCCCTCAACGCCGTTTCTCCCACATCACGTTCCCTTCTCTCCCTTCCTCCTAAGGCAGAAACAGCGCTGATTGCTACGTTAGATGGGACGCTGTATTTAATGGACAGTCAAGAGGATGGTTCCATGAGGGTGATATGGTCGTTCTCGACCGGTTCGCCGATATACAGTTCGTATCAAGCTCCTGTAAATAAGGACTGTTGTAAAGAAAATAATGAATCTGCAGCTGCACCAGCACCGGTTAGCGGGTTTGTGGAGTGTGGGGATGATTGGTCTTTGTATATGCATGACAAGCACTTTGGTAAAATGAGAATCTCAGAGTCTATTGCAGAATTTGTACTTCGTACACCTACAATTTCAGATGATGGAGCTGTTATACTTGGATCCAAAGAAATCAGTTTATTTGAAGTAGATGCTAAAACTGGATCGATCATTCAAATCCACGCCAAGTCTGATCCTGATAATATTTTCGCACCTTTGAGTGATGCTAGGAAGAGCGTTAGAAATATCATGAGTGCAGATCATAAAGATTTAGCTGATCCTAAGAAGCTAAATTCATCCCAGACGCTGCTCAAGATTTTTAGGACAGATTATTCTCTGCGATCTGTTAGCCCCAACTCGGGAAGCGTATTGTGGAATTTGACAGTAGCTGAATTCGAGGCTGTATTATTGTGCCAACATACTACATTTGAGGTAGAGGATGGATATTTTTCTGATAGTGGACTCAATTTTGCGATGCCTTACCCATGTCAAGAGATGCAAAATGTCTTCCGCGTGAAAAAAAAATTTCTGTTAGAATCTTTAATCACTGAAAGTGTACACGGGGCTTTTCATGAAAGTGATATACTCTCAGTGGCTGCCTCAGATCTGATGATTCCATTGCAACCTAGTATTGATAGACTCCCTCAGCCTCTCATTGAGGTTACTTCACCGGGTGATGTTTATTTGCACAAGAAGAGTGGATGGTCAACTCCATTACCTAGTATGTTGTTTACGGTTTTTCTTTTGGTGTCGGGCTTTTCACTCATCATCTTTCTTCTGGTGAAAGTGATTAAGAATCAAGATATATCAAAGGACCAAAATAAAGACTCTGAATTGAAAAATTCACCTGCCAAGAGAAAGAAAACACACAAGTCAGGAAAGAACCGTGGCACTAATGATAAAATGGAAAAACATCTTACTTCAGAAGATGATGCACTGACACCAAAAGATGCTAATGGAGAAGCATGGAAGAACTTAAATCAAGCTGATGAAGGTGTTGATGGACGAAGAATTGGTAAGTTATTCGTTTCAAATGAAGAGATTGCTAAGGGAAGCAATGGTACCATTGTCCTTGATGGAAGATATGAAGGCCGACCGGTTGCAGTCAAGCGTCTTGTCAAAACTCATCATAGTGTAGCCTATAAAGAAATCCAAAACCTCATTGTGTCTGACCGTCATCCAAACATTGTCAGATGGCATGGGGTGGAGTATGATCAAGATTTTATTTACCTTGCACTGGAACGCTGTACTTGCAACTTAGACGACTTGATTCAAATTTATTCAGATATATCAGAAGATTCCATTTTTAGGAAGGACCAAGCACTCGAATTGATAAAAGGAAAAATGGAGACAGGAAAGCATGATACACAGTATCTTTGGAAAGAAAATGGCTATCCATCACCTCTATTACTGAAATTGATGAGAGATATTGTTTCCGGGGTTGTTCATTTGCATGAACTAGGAATAATACATCGAGATTTGAAACCCCAAAATGTTCTAATAAACAAGGAAAAATCCCTATGTGCGAAGCTTTCTGACATGGGCATTAGCAAACGACTTCTTGAAAATATGTCCTCTTTGGGTCATAATGCTACTGGTGGGGGCAGTTCAGGTTGGCAAGCCCCAGAACAGCTTGATCAAGGACGTCAAACACGAGCTGTAGATATATTCAGTTTAGGTTGTGTTCTTTTTTTCTGTATGACTGGGGGAAGACATCCATTTGGACAAAATCTTGAACGTGACATCAATATTATGAAAAATCGAAAGAATTTATTCTTAGTTCAGTTCATTCCAGAAGCTGAGGATCTTATTAGCTGTTTATTAAACCCTAAACCTAATCTAAGGCCGAATGCGATTGAAGTATTGCACCATCCTTTTTTTTGGAGTCCCGACACAAGACTTTCATTTTTACGTGACACCAGTGACAGGGTGGAACTGGAAGATAGAGAGATTAGTTCTAATCTTTTGCGGGCTTTAGAAAGCATTGCTACAACAGCCTTAGGTGGTAAATGGGATGAAAAGATGGAACCAACTTTCATTGCTAACATTGGTCGTTACCGGCGCTATAAGTTTAACAGTGTTCGAGACTTGTTGCGCGTTATGAGAAACAAGCTAAATCATTATGGAGAATTGCCACAAGAAATCCAGGAACTAGTTGGACCTGTTCCTGAAGGATACAATGACTACTTTGCAAACCGATTCCCAAGACTCTTGATTGAAGTGTATAATGTCATATGCAAGCACTGCAAGGAGGAAGAGTGTTTTCAAAGGTATTTTAAAAATGATGATTAG 2610 0.4015 MKLLFLFRISFFLFILNQLSSLNAVSPTSRSLLSLPPKAETALIATLDGTLYLMDSQEDGSMRVIWSFSTGSPIYSSYQAPVNKDCCKENNESAAAPAPVSGFVECGDDWSLYMHDKHFGKMRISESIAEFVLRTPTISDDGAVILGSKEISLFEVDAKTGSIIQIHAKSDPDNIFAPLSDARKSVRNIMSADHKDLADPKKLNSSQTLLKIFRTDYSLRSVSPNSGSVLWNLTVAEFEAVLLCQHTTFEVEDGYFSDSGLNFAMPYPCQEMQNVFRVKKKFLLESLITESVHGAFHESDILSVAASDLMIPLQPSIDRLPQPLIEVTSPGDVYLHKKSGWSTPLPSMLFTVFLLVSGFSLIIFLLVKVIKNQDISKDQNKDSELKNSPAKRKKTHKSGKNRGTNDKMEKHLTSEDDALTPKDANGEAWKNLNQADEGVDGRRIGKLFVSNEEIAKGSNGTIVLDGRYEGRPVAVKRLVKTHHSVAYKEIQNLIVSDRHPNIVRWHGVEYDQDFIYLALERCTCNLDDLIQIYSDISEDSIFRKDQALELIKGKMETGKHDTQYLWKENGYPSPLLLKLMRDIVSGVVHLHELGIIHRDLKPQNVLINKEKSLCAKLSDMGISKRLLENMSSLGHNATGGGSSGWQAPEQLDQGRQTRAVDIFSLGCVLFFCMTGGRHPFGQNLERDINIMKNRKNLFLVQFIPEAEDLISCLLNPKPNLRPNAIEVLHHPFFWSPDTRLSFLRDTSDRVELEDREISSNLLRALESIATTALGGKWDEKMEPTFIANIGRYRRYKFNSVRDLLRVMRNKLNHYGELPQEIQELVGPVPEGYNDYFANRFPRLLIEVYNVICKHCKEEECFQRYFKNDD 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03257 869 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 558 735 - -
Vivi1g03257 869 Gene3D - 31 254 IPR015943 GO:0005515
Vivi1g03257 869 MobiDBLite consensus disorder prediction 401 423 - -
Vivi1g03257 869 SMART serkin_6 448 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03257 869 ProSiteProfiles KEN domain profile. 736 867 IPR010513 GO:0004540|GO:0006397
Vivi1g03257 869 Gene3D KEN domain 737 869 IPR038357 -
Vivi1g03257 869 CDD RNase_Ire1 739 865 - -
Vivi1g03257 869 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 32 234 IPR011047 -
Vivi1g03257 869 PANTHER IRE1-RELATED 123 868 IPR045133 GO:0004521|GO:0004674|GO:0030968
Vivi1g03257 869 SUPERFAMILY Protein kinase-like (PK-like) 448 738 IPR011009 -
Vivi1g03257 869 ProSiteProfiles Protein kinase domain profile. 448 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03257 869 Gene3D Transferase(Phosphotransferase) domain 1 558 735 - -
Vivi1g03257 869 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 737 869 - -
Vivi1g03257 869 SMART PGNneu 798 852 - -
Vivi1g03257 869 Pfam Protein kinase domain 450 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03257 869 Pfam Ribonuclease 2-5A 739 865 IPR010513 GO:0004540|GO:0006397
Vivi1g03257 869 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 440 520 - -
Vivi1g03257 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 595 607 IPR008271 GO:0004672|GO:0006468
Vivi1g03257 869 MobiDBLite consensus disorder prediction 378 424 - -
Vivi1g03257 869 Gene3D Phosphorylase Kinase; domain 1 436 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03257 Vivi-Chr1 70790982 70796117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03257 474 732 MAP Kinase Kinase Kinase AT3G06030 25.856 9.92e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Vivi1g03257 Pkinase 1.1e-39 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02750 2 122738368 122744811 Vivi1g03257 1 70790982 70796117 PCT