Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03255 ATGGTTAGAGTTTGGTTTGTGCTGTTGTTGATGGCTCTCTCCAATTTGTGGTTCTCTTCTGCTGCGGTTGGCTCGGATAATTCGACAGTACCGGAGTTTTTAAATATTGGGGTTCTCTACTCTTTCAATACTAGTGTTGGTAGAATAGTGAAAATTGCGGTGGAAACTGCGGTTGGTGATATAAATTCTGATTCTTCGATTCTTGGTAAAACTAAGTTGAAGCTCTCAATGCAAGAAGATTCAAAATATAGAGGCTTTTTGAGCATTGCTGAAGCGTTGCAGCTCATGGCGACACACACTGTGGCCATTATCGGTCCGCAGACATCTACGACAGCTCATGTCATATCTCATATAGCAAATGAGCTACATGTTCCTCTGCTATCGTTTTCAGCCACAGATCCTACTCTTTCCTCCCTTCAATTCCCGTTCTTCATTAGAACTGCTTTCAATGACATTTTTCAAATGACTGCAATAGCAGACATGGTTAGCCACTATGATTGGAGGGAGGTTATCGTAGTATACGGTGATGATGACCATGGGAGGAACGGAATTGGTGCATTAGCGGATAAGCTTGCTGAGAGACGTTGCAAGATATCGTTTAAAGCACCGATGACTCCTGATGCAAAGAGGGAGGAGATTACTGACATGCTTGTTCAGGTGGCTTTGGCAGAATCTCGGGTTATAGTTCTTCATACAAGTACTACTTGGGGTCCAAAAGTGTTGAGTGTTGCTAAGTCTCTTGGAATGATGCAAAATGGTTATGTTTGGATTGCTACTACTTTTCTCACGTCTTATATCGACATAGATAGTCCACTCTCTTCTGAAGAAATGGATAACATTCAAGGAGTTATTACACTAAGAATGCATATACCCGATTCAAAGCTCAAAAGATCGTTTGTTTCTAGGTGGACAAATTTGACCAGAGGAAAGGAGGGAAATGGTCCTCTTGGTTTGAGTACTTATGGTATCTTTGCGTATGATACTGTTTACGTGCTTGCTCGCGCCCTTGATACATTTTTGAAACAAGGGAACCAAATTACATTTTCGCATGATCCGAAGATATCTGAGCTACGTGGAGACAGCTTGCATCTAGATGCTGTGAAAATCTTCAATGAAGGAAATCTGTTGTGTAAAAATATTTATGCGGTTAACATGACTGGTGTAACGGGTCCATTCAGGTATACTCCTGACGGAAACCTTGCAAATCCAGCATATGAGATCATCAATGTGATCGGAACAGGGACTCGCAGGATCGGTTATTGGTCTAATTACTCCGGATTATCAGTTGTTCCTCCAGAAACACTTTATTCAAAACCACCTAACCGTTCCTATGAAAATCAAAAGCTACTCACCGTGTTTTGGCCGGGGGAAACAACCCAAACACCTCGCGGTTGGGTTTTTCCAAGCAATGGAAAGCTGTTGAGAATCGGAGTACCGAAAAGGGTTAGTTACCGCGAATTTGTTTCTCAGGTACAATCGACTGACATGTTCAAGGGATTCTGCATTGATGTGTTTCTTTCTGCAGTAAACTTGTTACCCTATGCTGTCCCCTATAAGTTTGTTCCGTACGGTGACGGTCTAAGCAATCCTAGTAACACTGAGCTTGTGCGTCTGATCACCGCCGGCGTTTTTGATGCTGCAGTAGGAGACATTACAATTACAACAGAGAGAACAAAGATGGTGGATTTTACTCAGCCGTATACCGAGTCTGGTCTAGTGGTCGTAGCATCGGTTAAGAAGACAGATTCCAATGCTTGGGCATTTTTGACACCATTTACACCAATGATGTGGACTGTAACAGCTATCTTTTTCTTACTAGTTGGCGCAGTTGTCTGGATTCTAGAACATAGACTGAATGATGATTTTAGGGGACCTCCTAAAAAACAAGTAGCCACAATTTTGTGGTTTACTTTTTCAACTATGTTCTTCGCTCACAGGGAAAACACAGTGAGCACTCTTGGTCGTTTTGTGCTGCTTATATGGCTATTTGTAGTTCTAATAATTAACTCGAGTTACACGGCAAGCCTGACTTCGATTCTCACAGTGCAACAACTTTCTTCACCTATTAAAGGCATTGAAAGTTTAGTAAATATGAAAGAGCCTATTGGTTACTTGCAGGGCTCTTTTGCCCGGTCCTATTTGATTGACGAAATCGGTATTCATGAATCCAGACTAGTTCCTCTAAAAACACCTGAAGAAACTGCGAAAGCGCTGGAGAAAGGTCCCCAAAACGGCGGTGTCGCTGCGTACATTAACGAGCGAGCTTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTTTACTATTGTAGGTCAAGAGTTTACCAAAAATGGTTGGGGATTTGCCTTTCCACCAGACTCGCCATTAGCAGTTGACCTCTCAACTGCCATTTTGGAGTTGGCAGAAAATGGAGATTTACAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCTTGTCGATTACAAGGTGCGAAGCTCGGAGTGGACAGACTCAATCTCAAAAGCTTTTGGGGACTTTACTTGGTCTGTGGTTTGGCATGTTTTCTTGCTCTCCTGATATATCTTATTCAAACCTTGAGGCAGTACAAGAAGCACAGTCCAGATGAACTTGAGTCTACTGGCCAAGGTTCGGGATCTTCACGTTTGCGGACTTTTCTTTCATTTGTAGATGAAAAAGAAGAGATAGTTAAGAGCCGCTCCAAGAGAAGGCAAATGGAAAGGATATCATATAGAAGCACAAGTGAAGTTGGATCAAGCATAGTCTCCAATAAAGATTTTTCTCAGCCATCCTCAAACAGAATTGAGTCTGAAGTATGA 2817 0.4228 MVRVWFVLLLMALSNLWFSSAAVGSDNSTVPEFLNIGVLYSFNTSVGRIVKIAVETAVGDINSDSSILGKTKLKLSMQEDSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELHVPLLSFSATDPTLSSLQFPFFIRTAFNDIFQMTAIADMVSHYDWREVIVVYGDDDHGRNGIGALADKLAERRCKISFKAPMTPDAKREEITDMLVQVALAESRVIVLHTSTTWGPKVLSVAKSLGMMQNGYVWIATTFLTSYIDIDSPLSSEEMDNIQGVITLRMHIPDSKLKRSFVSRWTNLTRGKEGNGPLGLSTYGIFAYDTVYVLARALDTFLKQGNQITFSHDPKISELRGDSLHLDAVKIFNEGNLLCKNIYAVNMTGVTGPFRYTPDGNLANPAYEIINVIGTGTRRIGYWSNYSGLSVVPPETLYSKPPNRSYENQKLLTVFWPGETTQTPRGWVFPSNGKLLRIGVPKRVSYREFVSQVQSTDMFKGFCIDVFLSAVNLLPYAVPYKFVPYGDGLSNPSNTELVRLITAGVFDAAVGDITITTERTKMVDFTQPYTESGLVVVASVKKTDSNAWAFLTPFTPMMWTVTAIFFLLVGAVVWILEHRLNDDFRGPPKKQVATILWFTFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLVNMKEPIGYLQGSFARSYLIDEIGIHESRLVPLKTPEETAKALEKGPQNGGVAAYINERAYIELFLSSRCDFTIVGQEFTKNGWGFAFPPDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACRLQGAKLGVDRLNLKSFWGLYLVCGLACFLALLIYLIQTLRQYKKHSPDELESTGQGSGSSRLRTFLSFVDEKEEIVKSRSKRRQMERISYRSTSEVGSSIVSNKDFSQPSSNRIESEV 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03255 938 Gene3D - 474 584 - -
Vivi1g03255 938 Pfam Receptor family ligand binding region 51 412 IPR001828 -
Vivi1g03255 938 Pfam Bacterial extracellular solute-binding proteins, family 3 517 814 IPR001638 -
Vivi1g03255 938 SMART GluR_14 475 816 IPR001320 GO:0015276|GO:0016020
Vivi1g03255 938 FunFam Glutamate receptor 585 715 - -
Vivi1g03255 938 FunFam Glutamate receptor 711 818 - -
Vivi1g03255 938 PIRSF IGluLR_plant 2 937 IPR017103 -
Vivi1g03255 938 Gene3D - 585 712 - -
Vivi1g03255 938 FunFam Glutamate receptor 150 304 - -
Vivi1g03255 938 FunFam Glutamate receptor 469 585 - -
Vivi1g03255 938 Gene3D - 748 821 - -
Vivi1g03255 938 CDD GluR_Plant 472 814 - -
Vivi1g03255 938 Gene3D - 150 427 - -
Vivi1g03255 938 Gene3D - 52 402 - -
Vivi1g03255 938 PRINTS Metabotropic glutamate GPCR signature 135 154 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vivi1g03255 938 PRINTS Metabotropic glutamate GPCR signature 103 129 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vivi1g03255 938 PRINTS Metabotropic glutamate GPCR signature 154 170 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vivi1g03255 938 PRINTS Metabotropic glutamate GPCR signature 170 187 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vivi1g03255 938 CDD PBP1_GABAb_receptor_plant 35 431 IPR044440 -
Vivi1g03255 938 MobiDBLite consensus disorder prediction 910 938 - -
Vivi1g03255 938 Pfam Ligand-gated ion channel 815 847 IPR001320 GO:0015276|GO:0016020
Vivi1g03255 938 SUPERFAMILY Periplasmic binding protein-like II 449 816 - -
Vivi1g03255 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 891 IPR015683 -
Vivi1g03255 938 MobiDBLite consensus disorder prediction 898 938 - -
Vivi1g03255 938 SUPERFAMILY Periplasmic binding protein-like I 30 466 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03255 Vivi-Chr1 70786483 70790784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03255 5 916 Ion Channels AT3G51480 59.126 0.0 1136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03255 K05387 - gmx:100788917 1562.36