Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03248 ATGTCGTGTTCTTCTTCATCTGGGTCCGAAGATGATAATGAGGGCTTCGATTCTTACCGGAAAGGTGGTTACCATGCTGTCAGGGTCGGCGATCAGTTCGCCGGTGGCCGGTATGTAGCTCAGAGGAAATTGGGGTGGGGTCAGTTTTCAACCGTTTGGCTTGCTTATGATACTACAACCTCTGGATATGTTGCTCTCAAGATTCAAAAAAGTGCGGCGCAGTTTGTTCAAGCTGCTCTTCATGAGATAAGCGTTCTTTCATCCCTTGCTGACGGTACTCCTTCAAATTCAAGATTTGTTGTTCAATTGATTGACCAGTTTAAGCACACGGGCCCAAACGGGCAGCACCAGTGCATGGTACTCGAGTTTCTTGGTGACAGCTTGCTTCGTCTAGTCAAATACAATCGTTACAAAGGTCTTCCACTGAATAAAGTTAGGGAGATTTGTCAATGCATTTTGATTGGTTTGGATTACTTGCATAGAGAACACGGTATTATCCATACAGACCTGAAACTGGAAAATGTTCTTCTTGTTTCTACCATTGATCCTGCCAAAGACCCTGTTAGATCAGGAGTCTCGCCGATTTTAGAGAGGCCAGAGGGAAACATAAACGGCGCGGTTACTAGTCTTATTGAGAAAAAGTTGAAAAGGAGAGCGAGGAGGGCAGTAGCTAAAATATCTGGACAAAGAAGTTCAATGGGAGGAATGGGGGAAACTCCGAAATCTGAGAGAAGAAATATTCATGGGATTGATGTTAGATGCAAAGTGGTAGATTTTGGAAATGCTTGTTGGGCTGATAAGCCATTTGCGGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTTATACTGCAAGCTGGCTATTCATTCTCCGTCGACATGTGGTCTTTTGCTTGCATTGCTTTTGAACTCGCCACTGGTGATATGTTGTTTACTCCCAAGGTCGGACAAGGTTTTAGCGAAGATGAGGATCACCTTGCTCTGATGATGGAACTCCTTGGAAAGATGCCCCGAAAGGTTGCGACTGCAGGAGCAAAATCTAAGGATTTCTTCGACAGACACGGTGATCTGAAAAGGATTCGAAGGCTAAAATTTTGGCCACTAAACAAACTATTGATCGAAAGATACACGTTTTCAGAGAGTGACGCTCATGAGTTTTCGGAGTTTCTTTTACCTCTTCTTGATTTTGTGCCCGAGAAGCGACCAACTGCGCAGCAGTGCCTACAACACCCGTGGCTTGCCGGAAAGGACTCCGTTCCTAGTGAAATGAGAAATGAAACCAGTGTTGAAAAAGTGGATGTTGGAATAAGCAACCTTAAAATCAGGGTGGGGAAGTGA 1341 0.4459 MSCSSSSGSEDDNEGFDSYRKGGYHAVRVGDQFAGGRYVAQRKLGWGQFSTVWLAYDTTTSGYVALKIQKSAAQFVQAALHEISVLSSLADGTPSNSRFVVQLIDQFKHTGPNGQHQCMVLEFLGDSLLRLVKYNRYKGLPLNKVREICQCILIGLDYLHREHGIIHTDLKLENVLLVSTIDPAKDPVRSGVSPILERPEGNINGAVTSLIEKKLKRRARRAVAKISGQRSSMGGMGETPKSERRNIHGIDVRCKVVDFGNACWADKPFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKVATAGAKSKDFFDRHGDLKRIRRLKFWPLNKLLIERYTFSESDAHEFSEFLLPLLDFVPEKRPTAQQCLQHPWLAGKDSVPSEMRNETSVEKVDVGISNLKIRVGK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03248 446 SUPERFAMILY Protein kinase-like (PK-like) 32 424 IPR011009 -
Vivi1g03248 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vivi1g03248 446 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Vivi1g03248 446 FunFam Protein kinase superfamily protein 24 123 - -
Vivi1g03248 446 CDD STKc_SRPK 27 414 - -
Vivi1g03248 446 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Vivi1g03248 446 FunFam Serine/threonine-protein kinase SRPK 115 414 - -
Vivi1g03248 446 Pfam Protein kinase domain 38 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03248 446 Pfam Protein kinase domain 253 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03248 446 ProSiteProfiles Protein kinase domain profile. 38 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03248 446 Gene3D Transferase(Phosphotransferase) domain 1 92 414 - -
Vivi1g03248 446 SMART serkin_6 38 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03248 446 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 238 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03248 Vivi-Chr1 70588602 70591462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03248 1 429 EF-hand Containing Proteins AT5G22840 49.480 2.29e-165 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vivi1g03248 Pkinase 1.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03248 K08832 - gmx:100814976 763.451