Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03242 ATGCCGAAAGCCAAATCCGACTCCAAAGCCGCTGATAGCCGGTTGAAACGGAAAGGCGCTGGAACTGGAAGGAAGCAGACGAAGAAAGCTGCTAAGGATCCAAACAGGCCTAAGAGGCCTCCCAGTGCTTTCTTCGTTTTCATGTCTGATTTTAGAGAACAGTATAAGAAGGATCATCCTACCAACAAATCTGTTGCCGCTGTTGGAAAAGCTTGCGGTGAAGAATGGAAATCCTTGACTGAAGAGGAAAAGGCTCCCTATGTTGCTAGGGCATTGAAGAAGAAAGAAGAGTATGATATAACTCTTAAAGCTTACACTAAGAAACTGGAGGGGGGGAAAGATGATGAAGAAGGTTCTGACAAGTCAAAATCTGAAGTCAATGATGAGGACGAAGATGAGGAGGATGATGAAGAAGATGATGATGAGTAG 429 0.4452 MPKAKSDSKAADSRLKRKGAGTGRKQTKKAAKDPNRPKRPPSAFFVFMSDFREQYKKDHPTNKSVAAVGKACGEEWKSLTEEEKAPYVARALKKKEEYDITLKAYTKKLEGGKDDEEGSDKSKSEVNDEDEDEEDDEEDDDE 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03242 142 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 139 IPR031061 -
Vivi1g03242 142 MobiDBLite consensus disorder prediction 105 142 - -
Vivi1g03242 142 Gene3D High mobility group box domain 21 122 IPR036910 -
Vivi1g03242 142 Pfam HMG (high mobility group) box 37 105 IPR009071 -
Vivi1g03242 142 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Vivi1g03242 142 MobiDBLite consensus disorder prediction 105 125 - -
Vivi1g03242 142 CDD HMG-box_AtHMGB1-like 38 98 - -
Vivi1g03242 142 SMART hmgende2 36 107 IPR009071 -
Vivi1g03242 142 MobiDBLite consensus disorder prediction 126 142 - -
Vivi1g03242 142 SUPERFAMILY HMG-box 28 109 IPR036910 -
Vivi1g03242 142 MobiDBLite consensus disorder prediction 1 44 - -
Vivi1g03242 142 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03242 Vivi-Chr1 70447883 70449401 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03242 33 113 ARID Transcription Factor Family AT1G04880 29.630 5.25e-06 42.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vivi1g03242 HMG_box 8.3e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03242 K25507 - gmx:100499992 201.06