Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03235 ATGGGTCTCTGTTCTTCCTTTCTCTCTTCCACCTCTACACCTCCCCAACCATCTTCTTCCTTCAACAGACCTCTTTCCTCAGGTTCAACAAGCACTGTTGGATTCTCTGCAACAACAAGCAGTATTGGAAGGAGTCAAATCTCCGAAATAGCAAGTGGAAGCATTGATAGTGTTACTGTGACTGAAGGATCTCTTCCTGTTCCTTCTTCACCAAATGGTCAAATTCTTGAAAGGCCAAATTTGAAGGTTTTTAGCTATGGTGATATGAAATCTGCTACGAAAAATTTCAAACCAGATACATTACTTGGTGAAGGTGGTTTTGGAAAAGTTTATAAAGGTTGGTTGGATGAGAAAACTCTTACTCCTGCTAAAGCTGGTTCTGGAATGATTGTTGCTATAAAAAAATTGAATTCTGAAAGTACTCAAGGGTTTCAAGAATGGCAGTCAGAAGTCAACTTTTTGGGAAGGCTTTCACACCCAAACTTGGTGAAGCTATTGGGTTATTGTTGGGATGATGAAGAGCTTCTTCTTGTGTATGAGTTCATGCCAAAAGGAAGTTTGGAGAATCATCTCTTCAGAAGAAATCCTAACATTGAACCACTTTCTTGGAATACAAGAATCAAAATAGCTATTGGTGCAGCTAGGGGTTTAGCTTTCTTGCATGAGTCTGAAAAGCAAGTCATATACCGAGATTTTAAAGCCTCGAATATACTCCTTGATGGGAGTTATAATGCGAAAATTTCAGATTTTGGATTAGCTAAATTGGGACCTTCTAGTGGACAATCACATGTAACTACAAGAGTCATGGGCACATATGGTTATGCTGCCCCAGAATACATTGCAACAGGGCACTTGTATGTGAAGAGTGACGTATATGGTTTCGGTGTCGTGCTATTAGAAATCCTAACAGCCATGAGAGCAATGGACACAAAAAGACCATCAGGGCAACAAAACCTAGTTGAATGGGTGAAACCTTTTCTCTCAAACAAGAAAAAACTAAAAGGCATAATGGATGCTAGAATAGAAGGACAATACTCACAAAAAGCAGCAATACAAGCAGCAGCACTTTCTCTAAAATGCCTAGAAGGTGACCCTAAACAACGTCCTTCTATGAAAGATGTACTTGAGTCATTGGAAGCTATTGAAGCCATTCAAGTCAAATCCAAGGAAACCAAGAAAAACAGTTCTCATCAACCACCAGTTCATCAAGCTGCTAGGCACCAGAGAGTTGTAAGAGTATAG 1242 0.3977 MGLCSSFLSSTSTPPQPSSSFNRPLSSGSTSTVGFSATTSSIGRSQISEIASGSIDSVTVTEGSLPVPSSPNGQILERPNLKVFSYGDMKSATKNFKPDTLLGEGGFGKVYKGWLDEKTLTPAKAGSGMIVAIKKLNSESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDDEELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRIKIAIGAARGLAFLHESEKQVIYRDFKASNILLDGSYNAKISDFGLAKLGPSSGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTAMRAMDTKRPSGQQNLVEWVKPFLSNKKKLKGIMDARIEGQYSQKAAIQAAALSLKCLEGDPKQRPSMKDVLESLEAIEAIQVKSKETKKNSSHQPPVHQAARHQRVVRV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03235 413 SUPERFAMILY Protein kinase-like (PK-like) 74 379 IPR011009 -
Vivi1g03235 413 PANTHER OS01G0588500 PROTEIN-RELATED 39 382 - -
Vivi1g03235 413 ProSitePatterns Protein kinases ATP-binding region signature. 102 135 IPR017441 GO:0005524
Vivi1g03235 413 Gene3D Phosphorylase Kinase; domain 1 80 181 - -
Vivi1g03235 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vivi1g03235 413 FunFam Serine/threonine-protein kinase PBS1 182 397 - -
Vivi1g03235 413 MobiDBLite consensus disorder prediction 388 413 - -
Vivi1g03235 413 CDD STKc_IRAK 102 381 - -
Vivi1g03235 413 MobiDBLite consensus disorder prediction 1 34 - -
Vivi1g03235 413 FunFam Serine/threonine-protein kinase BIK1 65 181 - -
Vivi1g03235 413 ProSiteProfiles Protein kinase domain profile. 96 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03235 413 Pfam Protein tyrosine and serine/threonine kinase 100 378 IPR001245 GO:0004672|GO:0006468
Vivi1g03235 413 Gene3D Transferase(Phosphotransferase) domain 1 182 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03235 Vivi-Chr1 70311174 70314980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03235 82 378 Glycoside Hydrolase AT3G07070 52.013 3.59e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi1g03235 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03235 - - gmx:100794193 644.039