Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03226 ATGGGAGGTGACGGTGCTGTTGAGGATTCTGCATCGGAATCGAAGACCGGTGTTGAAGGTGTTAACATCAACGTTCGATGCTCCAACGGTTCAAAGTATTCCGTTCAGGTTTCTCTCGATTCGACGGTTGGATCCTTCAAGGATCTCATTGCGAGGAACTGTGATATCCCCGCACAGCAACAACGTCTCATTTACAAGGGGAGGATATTGAAGGACGATCAAACGCTTCAAAGCTATGGTTTGGAGGCAGATCATGCTGTCCATTTGGTTCGTAGCTTTGCACCTGCCAACACGAGTGGAGGGGCTGGGACCAATAGTAGTGGCACTAATACCACAACGACTGATGCCAGAAGCGCTGGAGCTAATGATGTTGGGGGTGTAGGAGGGCTCGGTTTTGGAGCTTCACTATTCCCTGGTTTAGGTACCAATGCCACTGGAGGGAATGGCTTATTCGGCGAGGGATTTCCAGATCTTGAACAAATGCAGCAACCATTTATTTCAAACCCCAATTTAATGAGAGAATTAATGAACACACCTGCTATGCAGAATCTAGTGAGTAATCCCGAGATAGTGCGGAATCTTATTATGAACAACCCACAGATGCAAGAGCTCATGGATCGGAACCCTGAGCTAGCACACATACTTAATGATCCCAGCACTCTCCGCCAGACCCTTGAAGCTACAAGGAATCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGGGCTATGAGCAACATTGAATCATCTCCTGAGGGATTCAACATGCTAAGGCGCATGTATGAAAACGTTCAAGAACCATTTTTAAATGCCACTACAATGGCGGGTAATACAGCAACTCAGGGTGGCCTAGCCAGGGACCAATCAACTACTCCCTCAACCACTAGTTCTGAAACAACTGCTGGTTCTACCATACCCAATGCTAACCCACTTCCTAATCCTTGGTCCTCTACTGGAACTGGAGCTCCTCAAAATAACACCAGAAGATCAACTACTGGTGTGGATGCTAGGCCGCAAGCACCTACTGGCTTAGGAGGGCTTGGTTTGCCTGGCCTTGAGGGCATGCTGGGTGGCAGTGGTATGCCAGATCCTGCTTTACTAACCCAATTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTCTCCAACCCACAAACTTTGAGTCAGATTCTTGGTGCTGCTAATACTGAACAACGTGGTGGCATGCCTGATATGAATTCTCTTAGAGATGTGATGCAAAATCCAGAGTTCCTTCGTTTGTTTTCATCACCCGAGACATTGCAGCAACTCATGTCTTTCCAGCAAGCCCTTCTGTCTCAGCAAGGTCAGCAACAATCAACACGGGAACCGGGTCAAACTGGTGGAGGAACTGGACCTTTTAACAACATGGGGCTAGAGATGTTATCCAGCATGTTCGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAGCTTTCACAACTCCAAGAGATGGGATTCTTCGACACACAAGAGAACATTAGGGCTCTCATTGCTACTTCAGGGAATGTCCATGCAGCCGTTGAACGTCTTTTGGGGAATACTGGTCAGTAG 1623 0.4738 MGGDGAVEDSASESKTGVEGVNINVRCSNGSKYSVQVSLDSTVGSFKDLIARNCDIPAQQQRLIYKGRILKDDQTLQSYGLEADHAVHLVRSFAPANTSGGAGTNSSGTNTTTTDARSAGANDVGGVGGLGFGASLFPGLGTNATGGNGLFGEGFPDLEQMQQPFISNPNLMRELMNTPAMQNLVSNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTATQGGLARDQSTTPSTTSSETTAGSTIPNANPLPNPWSSTGTGAPQNNTRRSTTGVDARPQAPTGLGGLGLPGLEGMLGGSGMPDPALLTQLMQNPAISQMMQSMLSNPQTLSQILGAANTEQRGGMPDMNSLRDVMQNPEFLRLFSSPETLQQLMSFQQALLSQQGQQQSTREPGQTGGGTGPFNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNTGQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03226 540 CDD UBA_PLICs 498 536 - -
Vivi1g03226 540 MobiDBLite consensus disorder prediction 96 119 - -
Vivi1g03226 540 SMART ubq_7 21 92 IPR000626 GO:0005515
Vivi1g03226 540 FunFam Ubiquitin domain-containing protein DSK2b 195 251 - -
Vivi1g03226 540 MobiDBLite consensus disorder prediction 280 352 - -
Vivi1g03226 540 Pfam Ubiquitin family 23 92 IPR000626 GO:0005515
Vivi1g03226 540 Pfam UBA/TS-N domain 498 534 IPR015940 -
Vivi1g03226 540 PANTHER UBIQUILIN 15 535 IPR015496 -
Vivi1g03226 540 Gene3D - 193 251 - -
Vivi1g03226 540 MobiDBLite consensus disorder prediction 441 463 - -
Vivi1g03226 540 Gene3D - 480 540 - -
Vivi1g03226 540 SMART uba_6 498 536 IPR015940 -
Vivi1g03226 540 SUPERFAMILY UBA-like 494 536 IPR009060 GO:0005515
Vivi1g03226 540 MobiDBLite consensus disorder prediction 280 338 - -
Vivi1g03226 540 SUPERFAMILY Ubiquitin-like 18 103 IPR029071 -
Vivi1g03226 540 Gene3D - 8 103 - -
Vivi1g03226 540 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 492 537 IPR015940 -
Vivi1g03226 540 CDD Ubl_Dsk2p_like 21 93 - -
Vivi1g03226 540 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Vivi1g03226 540 SMART CBM 341 394 IPR006636 -
Vivi1g03226 540 SMART CBM 399 434 IPR006636 -
Vivi1g03226 540 SMART CBM 198 237 IPR006636 -
Vivi1g03226 540 SMART CBM 148 185 IPR006636 -
Vivi1g03226 540 FunFam Ubiquitin domain-containing protein DSK2b 481 539 - -
Vivi1g03226 540 MobiDBLite consensus disorder prediction 97 119 - -
Vivi1g03226 540 FunFam Ubiquitin domain-containing protein DSK2b 18 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03226 Vivi-Chr1 70155098 70160696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03226 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 1.82e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03226 K04523 - gmx:100776447 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03226 1 70155098 70160696 Vivi1g03226 1 70155098 70160696 ECH
Vivi2g02792 2 123752748 123758260 Vivi1g03226 1 70155098 70160696 PCT