Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi1g03217 | ATGGTTATTTCTTCTGATGATAATAAGGCCAATGCAGTCGTGCCCAGAAATTGTCAAGGTGGTGGAAGAAATGCTGGGCAGAATAGGAGAACTTTGAGTGTGATTAATCAGAATCTTGTGCAGGGTCGACCTTACCCTTGTGTTGTTAACAAGAGGGCGTTGGTTTCTGATAAACATGAGATTTGTGAAAAGAAACAGGCTGATCTGGGACATCGACCCATCACAAGAAGGTTTGCTGCAAAAATTGCTGGTTCACAGCAGCAATCTCATGCTGAGAAACCTAAGAATTCAAATCCATTGAATTCGAAACCCAATGTGTTTGGAAAAGCCATTGCTGTTGATGATGAACACAAGACACCGGGGGATCAACAACCCGAGCCTATGACTTTAGAGCAAACTGAACCAATGCATAGTGATCCAGATGAGATGGAAGAGGTTGAGATGGAGGATATTGATGGAGAGGGGGTTTTGGACATTGATGGCTCTGATGCAAATAATGCTCTTGCTGTTGTGGAATATATCGAAGATCTTCACTCTTACTACCGAAAAGTTGAGTGCATTGGCTGTGTTTCTCCGAACTATATGGAAGACCAAGTTGACCTTAATGATAGGATGAGGGCTATACTAGTTGACTGGCTTATTGAGGTTCATGACAAATTTGACCTCATGCAAGAGACATTGTTTCTTACAATTAATCTCATAGACAGATTCTTGGCAAAGCAAAATATCATAAGAAAGAAACTTCAGCTGGTTGGTCTTGTTGCCATGCTTTTGGCATGCAAATACGAGGAAGTCTCGGTTCCTGTCGTCTCGGATCTAATCCATATCTCTGACAAAGCTTATTCAAGGAAGGAACTTCTCCAAATGGAGAAGTTGATGCTCAACACCTTGCAGTATAACATGTCTCTACCAACAGCATATGTTTTCATGAGACGATTTCTCAAGGCTGCTCAAGCTAACAAAAAGCTTGAGATGGTAGCTTTTTTCTTGGTAGAGCTGTCTCTGGTGGATTATGGGATGCTGAAGTTTCCACCATCCTTGGTGGCTGCTGCTGCAGTCTACACAGCGCAATGCACTGTCAGCGGTTTCAAACACTGGAACAAAACTTGCGAATGGCACACCAACTACTCGGAAGATCAGCTATCAGAGTGCGCTAAGATGATGGTTGGATTACACCAGAAAGCTGGAACGGGAAAGCTTACAGGAGCGCATAGGAAGTATTGCTCGGCGAAGTTCAGCTTCACCGCAAAATGCGAACCAGCGTGTTTTCTTCTGGAGAATTGCGAGTCGTAG | 1293 | 0.4346 | MVISSDDNKANAVVPRNCQGGGRNAGQNRRTLSVINQNLVQGRPYPCVVNKRALVSDKHEICEKKQADLGHRPITRRFAAKIAGSQQQSHAEKPKNSNPLNSKPNVFGKAIAVDDEHKTPGDQQPEPMTLEQTEPMHSDPDEMEEVEMEDIDGEGVLDIDGSDANNALAVVEYIEDLHSYYRKVECIGCVSPNYMEDQVDLNDRMRAILVDWLIEVHDKFDLMQETLFLTINLIDRFLAKQNIIRKKLQLVGLVAMLLACKYEEVSVPVVSDLIHISDKAYSRKELLQMEKLMLNTLQYNMSLPTAYVFMRRFLKAAQANKKLEMVAFFLVELSLVDYGMLKFPPSLVAAAAVYTAQCTVSGFKHWNKTCEWHTNYSEDQLSECAKMMVGLHQKAGTGKLTGAHRKYCSAKFSFTAKCEPACFLLENCES | 430 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi1g03217 | 430 | CDD | CYCLIN_AtCycB-like_rpt1 | 153 | 299 | - | - | |
| Vivi1g03217 | 430 | Pfam | Cyclin, N-terminal domain | 177 | 302 | IPR006671 | - | |
| Vivi1g03217 | 430 | Pfam | Cyclin, C-terminal domain | 304 | 419 | IPR004367 | - | |
| Vivi1g03217 | 430 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Vivi1g03217 | 430 | MobiDBLite | consensus disorder prediction | 82 | 104 | - | - | |
| Vivi1g03217 | 430 | Gene3D | - | 190 | 302 | - | - | |
| Vivi1g03217 | 430 | PANTHER | CYCLINS | 126 | 399 | IPR039361 | - | |
| Vivi1g03217 | 430 | ProSitePatterns | Cyclins signature. | 206 | 237 | IPR006671 | - | |
| Vivi1g03217 | 430 | MobiDBLite | consensus disorder prediction | 82 | 137 | - | - | |
| Vivi1g03217 | 430 | PIRSF | Cyclin_A_B_D_E | 2 | 430 | IPR046965 | GO:0016538|GO:0044772 | |
| Vivi1g03217 | 430 | SUPERFAMILY | Cyclin-like | 304 | 420 | IPR036915 | - | |
| Vivi1g03217 | 430 | CDD | CYCLIN_AtCycB-like_rpt2 | 304 | 420 | - | - | |
| Vivi1g03217 | 430 | SUPERFAMILY | Cyclin-like | 165 | 301 | IPR036915 | - | |
| Vivi1g03217 | 430 | Gene3D | - | 176 | 414 | - | - | |
| Vivi1g03217 | 430 | SMART | Cyclin_C_2 | 304 | 421 | IPR004367 | - | |
| Vivi1g03217 | 430 | FunFam | G2/mitotic-specific cyclin-1 | 280 | 416 | - | - | |
| Vivi1g03217 | 430 | SMART | cyclin_7 | 211 | 295 | IPR013763 | - | |
| Vivi1g03217 | 430 | SMART | cyclin_7 | 308 | 390 | IPR013763 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi1g03217 | Vivi-Chr1 | 69998893 | 70002502 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi1g03217 | 2 | 425 | Core Cell Cycle Gene Families | AT1G20610 | 55.275 | 3.06e-168 | 477 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi1g03217 | K21777 | - | gmx:100798068 | 607.446 |