Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03188 ATGGCCGAATCACCCCCTAGAAGGATTTCAAAGTCCCCTTCACCGTCACCATGGAAGGCTCAATCACGTTCGAGATCAAGGTCAAGGTCTGTGCCAAGACAAAGGCCAAGATCTGACTCCAGAGGCCGCGGCAGATCAAGGTCTCGGAGCCCTGAAAGGGGGGCCAATCCTACAAATCCTGGCAATACCCTTTATGTTACTGGTCTATCTTCAAGGGTCACCGAGAGGGACCTAGAGGACCATTTTTCCAAGGAGGGGAAAGTTGCTTCATGCTTTCTTGTAGTGGAGCCACGTACCCGAATTTCTCGTGGTTTTGCTTTTGTTACAATGGATTCCCACGAGGATGCTGAACGGTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACGTCACTGTAGAACGGTCAAGAAGAAAGCGTGCAAGAACTCCAACACCAGGGCATTATCTTGGGCTGAAAAATACTAGAGACTATGGCTCTCGTGGTGACAATCGTGATGACTTTCGTGGTGGCAATCGTGGTGACTTTCGTGGTGATAGTCGTGGTGACTATCGTGGCGACAGTCGTGGTGACTATCGTGGTGGCAGTCGTGGTGACTTTCGTGGCGACGGTCGTGGTGATTTTCGTGGCGACAATCGTGGCGACTTTCGTGGTGACCGGGGAAGGAATTACGGTGGTTCTGGTCGTGTTGAGTATTCACATCGTAGGTCTCCAAGGCGTTCACCATATCGCGGAGGCCAAGATCATTCACCACAACGCTCACCCTATGTTGAGAGGTCTAGGAGGGAGAGATCCAGATCTATTCCCCATTCTCCTTATAGCCCAGACAGGAGGTATGCTGGTGGATCTAGATGA 861 0.5064 MAESPPRRISKSPSPSPWKAQSRSRSRSRSVPRQRPRSDSRGRGRSRSRSPERGANPTNPGNTLYVTGLSSRVTERDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCIKYLNQSVLEGRYVTVERSRRKRARTPTPGHYLGLKNTRDYGSRGDNRDDFRGGNRGDFRGDSRGDYRGDSRGDYRGGSRGDFRGDGRGDFRGDNRGDFRGDRGRNYGGSGRVEYSHRRSPRRSPYRGGQDHSPQRSPYVERSRRERSRSIPHSPYSPDRRYAGGSR 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03188 286 MobiDBLite consensus disorder prediction 32 50 - -
Vivi1g03188 286 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 146 - -
Vivi1g03188 286 SUPERFAMILY RNA-binding domain, RBD 56 169 IPR035979 GO:0003676
Vivi1g03188 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Vivi1g03188 286 MobiDBLite consensus disorder prediction 1 65 - -
Vivi1g03188 286 MobiDBLite consensus disorder prediction 51 65 - -
Vivi1g03188 286 MobiDBLite consensus disorder prediction 136 286 - -
Vivi1g03188 286 Gene3D - 7 146 IPR012677 -
Vivi1g03188 286 CDD RRM_SF 64 136 - -
Vivi1g03188 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 133 IPR000504 GO:0003723
Vivi1g03188 286 MobiDBLite consensus disorder prediction 256 273 - -
Vivi1g03188 286 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 47 271 - -
Vivi1g03188 286 SMART rrm1_1 63 136 IPR000504 GO:0003723
Vivi1g03188 286 MobiDBLite consensus disorder prediction 160 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03188 Vivi-Chr1 69535410 69538512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03188 59 124 Eukaryotic Initiation Factors Gene Family AT3G11400 40.909 1.54e-07 50.1