Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03180 ATGGAGTTTGCAGCAAATCAATGCTCTTTATTTGAATTCTTTGATAGTTTCATTGAGAGGGTCAAATGGGTAGGTGTCCTCATCGTCTCCGTCATCATCGGGAACATCTTCTCTGCGATCTTGACTTTCTGCTTTGCATTTGTGGGGACTTTTTTGGGGGCTATGACTGGAGCCTTCATAGGGCAAGAAACTGAGAGTGGCTTCATTCGAGGTGCTGCTGTTGGTGCTATGTCAGGAGCTGTTTTCTCTATCGAAGTCTTTGAATATTCTCTTAATCTTTGGCGTTCTAATGAATCTGGAATCGATTGTCTCTTATACTTGATTGATGTTATTACTAGCCTAATGAGTGGGAGACTTGTACGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATAGGTAGTACTGATGAAATAGGCTTTTATGAGCTTCAAAACTTCTATGATATTGGCGATACAAGAGGTTTATCAGTAGTTTTAGTTGAAAAGATACCAACAATATCAATCACAAGTAATGATAATTTTGATGCTTCTGGTGATAGAGTCTCATGTTCAGTATGTCTTCAGGACTTGCAAGTTGGAGAGAGCGTTAGAAGGCTACCCCATTGTCATCATATGTTTCACCTACCTTGCATTGATAAGTGGCTCATTAAGCATGGATCTTGCCCATTATGTCGAAGAGATGTATAA 699 0.4034 MEFAANQCSLFEFFDSFIERVKWVGVLIVSVIIGNIFSAILTFCFAFVGTFLGAMTGAFIGQETESGFIRGAAVGAMSGAVFSIEVFEYSLNLWRSNESGIDCLLYLIDVITSLMSGRLVRERIGPAMLSAVQSQIGSTDEIGFYELQNFYDIGDTRGLSVVLVEKIPTISITSNDNFDASGDRVSCSVCLQDLQVGESVRRLPHCHHMFHLPCIDKWLIKHGSCPLCRRDV 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03180 232 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 19 232 IPR044523 -
Vivi1g03180 232 Pfam Ring finger domain 186 229 IPR001841 -
Vivi1g03180 232 CDD RING-H2_NIPL1-like 186 229 - -
Vivi1g03180 232 SMART ring_2 187 228 IPR001841 -
Vivi1g03180 232 FunFam NEP1-interacting protein-like 1 147 232 - -
Vivi1g03180 232 SUPERFAMILY RING/U-box 165 232 - -
Vivi1g03180 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 232 IPR013083 -
Vivi1g03180 232 ProSiteProfiles Zinc finger RING-type profile. 187 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03180 Vivi-Chr1 69488012 69489373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03180 16 232 C3H Transcription Factor Family AT5G66070 65.438 4.04e-97 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03180 - - gmx:100816939 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02867 2 125516136 125517915 Vivi1g03180 1 69488012 69489373 PCT