Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03179 ATGTTTGAAGGTAGAAATGCATCTACACATAATATCTTACTAGGATTTATTGCAGGCATTTCAACAGTTATGGCATTGGCTTTATTGTTCTTCCTCTTCTGGAAAAAGATTATTCCATTTCTTAAACAACCTAACACTTTGAAAGGAAAGGAGTATAAAAGCTTGAAATATGATAAAACATCTTTAAGGTGTTTTAAGATAGAGGAACTAGAGAGAGCTACACAAAATTTTAGCCAAGATTGCTTATTGGGTTCTGGTGCGTTTGGTAATGTCTACAAGGGAACTTTTGAGTTAGAAGGAATATTAGCCATAAAGAGACCTCATTCTGAGTCATTCTTAAGTGTTGAAGAATTCAGGAATGAAGTTAGGCTTCTTTCAGCTGCAAAACACAAGAACCTTGTTAGTCTGGTTGGATATTGTGAACAACCAGAAAGAGATGGAGCAAAAATACTAGTCTATGAATATGTATCAAATGGTTCACTCCTGGAGTACATGATGGGAAACAGAAGGAGATGCTTAACTTGGAAGCAAAGAGTAAATATTGCAATAGGAGCAGGAAAAGGCATAGCTTATTTGCATGAAGAGGTGAAGCCAAGTATAATTCATCGTGACATCAAACCAAGTAATATCTTATTAGGGGAAGATTTTGAGGCCAAAGTTTCAGATTTTGGGTTGGTAAAATCAGGTCCTACTGGTGATCAATCACATGTCAGTAGCCAAATCAAAGGGACACCAGGGTACCTTGATCCTGCATATTGTTCAAGCTGCCATTTGACAAAATTCAGTGATGTGTATAGCTTTGGTGTCATACTTTTGCAACTTATTTCAGCTAGACCTGCTGTGGATAATGCTGAAAATCCAAGCAACCAACATATTATTGATTGGGCAAGGCCTAGCATAGAGAAAGGTAGCATTGAAGAAATCATGGATGCAAATCTATTTTGTGAAAGTGAGCCATGCAATATGAAAGTTATGTTAAAAATGGGACAACTTGGTATGAGATGTGTGGCTCAAGAACCAAAACATCGTCCCACAATGACCCAAGTTTGTAAAGAACTAGAGCAGGCCCTCTTCTCAGATGATAACTTCAGAAACAAGGATTCAGAAACCCTTTCACAAAGCTTCGTGAGCATAGATGGTGTTGGACTTGAGAAATTCCATGTTGATATGGATAGCTTCTCCTTTAAGAGCACAAACTTAAGGTGCTTAGAAAATAATAGTATTAGTATTGACATTGACAAAAACAATTTGAGAAGGATACAATAG 1266 0.3697 MFEGRNASTHNILLGFIAGISTVMALALLFFLFWKKIIPFLKQPNTLKGKEYKSLKYDKTSLRCFKIEELERATQNFSQDCLLGSGAFGNVYKGTFELEGILAIKRPHSESFLSVEEFRNEVRLLSAAKHKNLVSLVGYCEQPERDGAKILVYEYVSNGSLLEYMMGNRRRCLTWKQRVNIAIGAGKGIAYLHEEVKPSIIHRDIKPSNILLGEDFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSCHLTKFSDVYSFGVILLQLISARPAVDNAENPSNQHIIDWARPSIEKGSIEEIMDANLFCESEPCNMKVMLKMGQLGMRCVAQEPKHRPTMTQVCKELEQALFSDDNFRNKDSETLSQSFVSIDGVGLEKFHVDMDSFSFKSTNLRCLENNSISIDIDKNNLRRIQ 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03179 421 Pfam Protein tyrosine and serine/threonine kinase 82 353 IPR001245 GO:0004672|GO:0006468
Vivi1g03179 421 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524
Vivi1g03179 421 SMART serkin_6 77 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03179 421 CDD STKc_IRAK 83 355 - -
Vivi1g03179 421 FunFam Putative LRR receptor-like serine/threonine-protein kinase 46 155 - -
Vivi1g03179 421 Gene3D Transferase(Phosphotransferase) domain 1 156 378 - -
Vivi1g03179 421 Gene3D Phosphorylase Kinase; domain 1 41 155 - -
Vivi1g03179 421 Coils Coil 420 421 - -
Vivi1g03179 421 ProSiteProfiles Protein kinase domain profile. 77 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03179 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Vivi1g03179 421 PANTHER OS01G0750732 PROTEIN 53 367 - -
Vivi1g03179 421 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 156 359 - -
Vivi1g03179 421 SUPERFAMILY Protein kinase-like (PK-like) 55 354 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03179 Vivi-Chr1 69455192 69457530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03179 12 356 Receptor kinase-like Gene Family AT5G48740 40.805 2.89e-74 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vivi1g03179 PK_Tyr_Ser-Thr 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03179 - - gmx:106794267 630.557