Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03152 ATGTTTACAAAGTGCATGCACGTTTTTGATAGATTTTTTCTGTGTATTGCCACTTCTTGGAATAAAAATATCACACCAAACAGCACAAGGAAATTCAATAGGGATGTCGAGAAAGAAGAAGACTTTCAGTTTGCAAGTACTCAATGTCTCTCATCCTATTACAGTGTCTTTGTCGTTCGCCTAGCAATCATGGTTATGCTAGCTATCTTGATTGGTCTACTCACTATCCTAACATGGCATTTCACAAAGATTTATACAACAAAGTCTCTAAATAGTCTTGCTTATGACCTACGTTACGAGCTTCTGCAACGTCCGATTTTGAGGATGTGGAACATTTTGAACACTACTGCTGAAATCACAGCTGCTCAAGTTAAGTTGTCTGAGTATGTTATCAGAAGCCATAGTAACCTAGCCAATCAAGCAGAACAAGTTCAGATGTATGAGTCCATGAGGGCTGTAACATGGGCGCTGTTTGCTAGTCGAAAAGCTCTCAACTCGATTACTGTCAAATACAACAACGGTTTTGTCCAGGCATTTCATAGAGACTTGAAGGATAATAATACTTTTTACATTTACACTGATCTTGCACATAATGAGACCAATTCATTTGCAGCAGATGATGAAGTTTCGAATGATGAAGAAGTTCATAGCAACAAGTCTGTGATTTGGTACCGAGAACAGCTTGATCCTGGCAGCGGCGAGAAGATCGGAAAAGCAATAAAAATTGCACCAGAAAACTCTATAAGTATAGCTGGCCTGTCCCAAGTACCCGACGGTGTAGCTTCGTGGAACGTTTCTGTGAACAAGTTTACGGATTCACCTTTACTTTCAGCAGCATTGCCGGTTTGGGATTCTTCTAATAAGAGCATTGTTGCAGTTGTGGGAGTCACTACTTCACTTTATAGTGTAGGGCAGCTAATGAAGGAACTAGTTGATAAGCACAGCGGTCATATATATTTGACCTCGCAAAAAGGCTATTTGCTCGCAACTTCCACGAATGATCCTCTACTGACAAATTCAAGAAAGAATCCTAAGCTAAAAATGGCTGTTGACTGTGATAATGAAGTAATAAGAGAAGGAGCTCAGTGGCTACAGAAAACCTACGGGAACGATTTCCCTCCGAGTCACGAGGTTCATGTAGAGAATGCCATGCTAGGTCGCCAGCAATATTATATTGATTCGTTCTACCTGAACTTGAACAGGCTTCCTCTGGTGGGCGTGATAATCTTACCGAGGAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTAATATCTGCATCATTGTGTATTATCGTCATTGGATGTTTTTGCATTTTGATATTGACAAATGGAGTATCGAAGGAAATGAACCTTAGAGCAGAATTAATCAGTCATCTCGAAGCAAGAAGAAAGGCGGAGGCATCAAGCAACTATAAAAGCCAATTTCTCGCAAATATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATTGGATTACTCGACATTCTTTTGTCTGATGATCATCTCACAAATGAACAATGTGCAACCGTCACTCAAATAAGAAAATGCTCAACCACGTTACTCCGTTTACTCAATAACATCTTGGATCTAAGCAAGGTGGAATCGGGAAAACTAGTCTTAGAAGATGCCGAATTTGATTTGGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCGGTGCAATGTATTAACCACACTGTAGAAATTATTTTAGACCTTTCTGACGATATGCCAAAGCTAGTTCGGGGAGATTCTGCTAGAGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCAATCAAGTTTACTCTATCGGGACACATTATTCTGAGAGGATGGTGTGGAAACTCGAATTTTTATGGTGGTAATGAAAATTTCGAGCCGAAGAAATTTGGGTGTTCCCCAAAGACCAGGACGAAGCAGCATGAAAACCATGCAAAGAAGGCTTCTAATAGTGATAACAAAATGATAATTTGGTTTGAAGTCGATGACACGGGTTGCGGTATTGACCCTAGTAAATGGGATTCAGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCACGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGATCCTTGGTTAATAAGATGGGTGGAGAAATCAAGATTGTCAAAAAGGAGGGACCAGGAACACTAATGCGATTATACCTGCGTCTCAACGCACCCGTGGATACCACAGAGCAACACTGTCAAGTAGATTTTGCTAACAACGGCTTAGTGGTACTTCTTGCACTACATGGCAACATGAGTCGATTAATTACGTCTAAGTGGTTACAGACAAACGGCGTTGTCACTATGGAAGCATCTGAGTGGAATGGATTAACACAAATTCTAAAAGAATTATTTCATGAAAGAACTTCAGCTCATCATAATGATATCGAGTTTGATGCACCTTATCCAGCTCATGAGGTTCTGAAATCCAAATTGCTGAGCATACAGGAATTGACAAACCCGACATTTGTCATTGCTGTTGATATTGATCTACTTGACTTGAGCACAGATATATGGAAGGAACAACTTAACTTCCTTCACAAGTACTACGGCAGAGCGAAATTCATTTGGTTACATAACCATGACTCGGCTAAAATCATAAAGACGGAGCTTCGCAAGAAAGGGCGCATACTAACTGTCAACAAACCTCTTTACAAAGCAAAGATGGTGCATATTTTGGAAGCTGTCATAAACGAAAGAAATGTTGAGGCACAAAAGCAAAATATGATTACTTCGAGACTCACAGGGAAAGAAGGTGATTTGCATGAGAGTCTAGAGATTGATTATACAGCTCATTGTGACGTTGGAAGCTCAGATGGCTCTGACATATCTGAAATTGGTAGTTCTAATCTTGGTACTGCCAATGGAGATAAGCAAATAAAAGAGGTAGTTAGACTCAGTCGACCATCGATATACCAAAAAAGTAGCAGCTTATTAGGATTACATGATGAATATATGGAACATAGTAGTCTTGGTAATGAAGCGTTTATTTCAACAAGAGCAAAAGGTGAAGATTCTGAAGGTAGCGAAACAAATAAGGTTAGTGGTTCAAGTAAAGCTATAAAAGGAAATAAGTCTCTTGAAGGTCTGAGGATATTGCTTGCAGAAGATACCGCAGTAATTCAAAGGGTTGCAACGATAATGCTTGAAAAAATGGGAGCCACTGTTGTTGCTGTAGGTGATGGGCAACAGGCGGTGGATGCCCTAAATGGCACGATCGGTGTTGAAAATTGTAGAAACACAAGAACATCTGAAACTGAGATTCTAAGTTTCCCTTCATATGACTTAATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAAGCAACAAAAGAAATAAGAAAATCAGAAGTGGGAACTGGATTCCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAATGTTTGGAAGTGGGCATGGATGCTTATTTAACAAAGCCAATTGACTTTAAACTGATGGAATCTACCATTCTTTCACTCACAAGAGAGAAAACTTGA 3573 0.3994 MFTKCMHVFDRFFLCIATSWNKNITPNSTRKFNRDVEKEEDFQFASTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNTTAEITAAQVKLSEYVIRSHSNLANQAEQVQMYESMRAVTWALFASRKALNSITVKYNNGFVQAFHRDLKDNNTFYIYTDLAHNETNSFAADDEVSNDEEVHSNKSVIWYREQLDPGSGEKIGKAIKIAPENSISIAGLSQVPDGVASWNVSVNKFTDSPLLSAALPVWDSSNKSIVAVVGVTTSLYSVGQLMKELVDKHSGHIYLTSQKGYLLATSTNDPLLTNSRKNPKLKMAVDCDNEVIREGAQWLQKTYGNDFPPSHEVHVENAMLGRQQYYIDSFYLNLNRLPLVGVIILPRKHIMGQADERAFKTLVILISASLCIIVIGCFCILILTNGVSKEMNLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDHLTNEQCATVTQIRKCSTTLLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHTVEIILDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCGNSNFYGGNENFEPKKFGCSPKTRTKQHENHAKKASNSDNKMIIWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRSLVNKMGGEIKIVKKEGPGTLMRLYLRLNAPVDTTEQHCQVDFANNGLVVLLALHGNMSRLITSKWLQTNGVVTMEASEWNGLTQILKELFHERTSAHHNDIEFDAPYPAHEVLKSKLLSIQELTNPTFVIAVDIDLLDLSTDIWKEQLNFLHKYYGRAKFIWLHNHDSAKIIKTELRKKGRILTVNKPLYKAKMVHILEAVINERNVEAQKQNMITSRLTGKEGDLHESLEIDYTAHCDVGSSDGSDISEIGSSNLGTANGDKQIKEVVRLSRPSIYQKSSSLLGLHDEYMEHSSLGNEAFISTRAKGEDSEGSETNKVSGSSKAIKGNKSLEGLRILLAEDTAVIQRVATIMLEKMGATVVAVGDGQQAVDALNGTIGVENCRNTRTSETEILSFPSYDLILMDCQMPKMDGYEATKEIRKSEVGTGFHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTREKT 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03152 1190 Gene3D - 466 545 - -
Vivi1g03152 1190 Gene3D - 1026 1186 - -
Vivi1g03152 1190 Pfam Response regulator receiver domain 1049 1179 IPR001789 GO:0000160
Vivi1g03152 1190 ProSiteProfiles Histidine kinase domain profile. 485 741 IPR005467 -
Vivi1g03152 1190 CDD REC_hyHK_CKI1_RcsC-like 1049 1182 - -
Vivi1g03152 1190 PRINTS Bacterial sensor protein C-terminal signature 684 694 IPR004358 GO:0016310|GO:0016772
Vivi1g03152 1190 PRINTS Bacterial sensor protein C-terminal signature 701 719 IPR004358 GO:0016310|GO:0016772
Vivi1g03152 1190 PRINTS Bacterial sensor protein C-terminal signature 725 738 IPR004358 GO:0016310|GO:0016772
Vivi1g03152 1190 PRINTS Bacterial sensor protein C-terminal signature 666 680 IPR004358 GO:0016310|GO:0016772
Vivi1g03152 1190 SUPERFAMILY CheY-like 1045 1187 IPR011006 -
Vivi1g03152 1190 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 465 545 IPR036097 GO:0000155|GO:0007165
Vivi1g03152 1190 Pfam His Kinase A (phospho-acceptor) domain 479 544 IPR003661 GO:0000155|GO:0007165
Vivi1g03152 1190 FunFam Histidine kinase 1-like protein 466 545 - -
Vivi1g03152 1190 CDD HisKA 479 540 IPR003661 GO:0000155|GO:0007165
Vivi1g03152 1190 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 533 738 IPR036890 -
Vivi1g03152 1190 PANTHER TWO-COMPONENT HISTIDINE KINASE 32 749 - -
Vivi1g03152 1190 SMART HisKA_10 478 544 IPR003661 GO:0000155|GO:0007165
Vivi1g03152 1190 ProSiteProfiles Response regulatory domain profile. 1048 1186 IPR001789 GO:0000160
Vivi1g03152 1190 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 591 739 IPR003594 -
Vivi1g03152 1190 Gene3D - 546 742 IPR036890 -
Vivi1g03152 1190 MobiDBLite consensus disorder prediction 1017 1037 - -
Vivi1g03152 1190 SMART REC_2 1047 1182 IPR001789 GO:0000160
Vivi1g03152 1190 SMART HKATPase_4 591 741 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03152 Vivi-Chr1 69090050 69095610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03152 8 1187 Histidine Kinase Gene Family AT2G17820 62.583 0.0 1465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi1g03152 HATPase_c 3.7e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03152 - - gmx:100801970 1836.23