Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03151 ATGTTTACAAAGTGCATGCACGTTTTTGATAGATTTTTTCTGTGTATTGCCACTTCTTGGAATAAAAATATCACACCAAACAGCACAAGGAAATTCAATAGGGATGTCGAGAAAGAAGAAGACTTTCAGTTTGCAAGTACTCAATGTCTCTCATCCTATTACAGTGTCTTTGTCGTTCGCCTAGCAATCATGGTTATGCTAGCTATCTTGATTGGTCTACTCACTATCCTAACATGGCATTTCACAAAGATTTATACAACAAAGTCTCTAAATAGTCTTGCTTATGACCTACGTTACGAGCTTCTGCAACGTCCGATTTTGAGGATGTGGAACATTTTGAACACTACTGCTGAAATCACAGCTGCTCAAGTTAAGTTGTCTGAGTATGTTATCAGAAGCCATAGTAACCTAGCCAATCAAGCAGAACAAGTTCAGATGTATGAGTCCATGAGGGCTGTAACATGGGCGCTGTTTGCTAGTCGAAAAGCTCTCAACTCGATTACTGTCAAATACAACAACGGTTTTGTCCAGGCATTTCATAGAGACTTGAAGGATAATAATACTTTTTACATTTACACTGATCTTGCACATAATGAGACCAATTCATTTGCAGCAGATGATGAAGTTTCGAATGATGAAGAAGTTCATAGCAACAAGTCTGTGATTTGGTACCGAGAACAGCTTGATCCTGGCAGCGGCGAGAAGATCGGAAAAGCAATAAAAATTGCACCAGAAAACTCTATAAGTATAGCTGGCCTGTCCCAAGTACCCGACGGTGTAGCTTCGTGGAACGTTTCTGTGAACAAGTTTACGGATTCACCTTTACTTTCAGCAGCATTGCCGGTTTGGGATTCTTCTAATAAGAGCATTGTTGCAGTTGTGGGAGTCACTACTTCACTTTATAGTGTAGGGCAGCTAATGAAGGAACTAGTTGATAAGCACAGCGGTCATATATATTTGACCTCGCAAAAAGGCTATTTGCTCGCAACTTCCACGAATGATCCTCTACTGACAAATTCAAGAAAGAATCCTAAGCTAAAAATGGCTGTTGACTGTGATAATGAAGTAATAAGAGAAGGAGCTCAGTGGCTACAGAAAACCTACGGGAACGATTTCCCTCCGAGTCACGAGGTTCATGTAGAGAATGCCATGCTAGGTCGCCAGCAATATTATATTGATTCGTTCTACCTGAACTTGAACAGGCTTCCTCTGGTGGGCGTGATAATCTTACCGAGGAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTAATATCTGCATCATTGTGTATTATCGTCATTGGATGTTTTTGCATTTTGATATTGACAAATGGAGTATCGAAGGAAATGAACCTTAGAGCAGAATTAATCAGTCATCTCGAAGCAAGAAGAAAGGCGGAGGCATCAAGCAACTATAAAAGCCAATTTCTCGCAAATATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATTGGATTACTCGACATTCTTTTGTCTGATGATCATCTCACAAATGAACAATGTGCAACCGTCACTCAAATAAGAAAATGCTCAACCACGTTACTCCGTTTACTCAATAACATCTTGGATCTAAGCAAGGTGGAATCGGGAAAACTAGTCTTAGAAGATGCCGAATTTGATTTGGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCGGTGCAATGTATTAACCACACTGTAGAAATTATTTTAGACCTTTCTGACGATATGCCAAAGCTAGTTCGGGGAGATTCTGCTAGAGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCAATCAAGTTTACTCTATCGGGACACATTATTCTGAGAGGATGGTGTGGAAACTCGAATTTTTATGGTGGTAATGAAAATTTCGAGCCGAAGAAATTTGGGTGTTCCCCAAAGACCAGGACGAAGCAGCATGAAAACCATGCAAAGAAGGCTTCTAATAGTGATAACAAAATGATAATTTGGTTTGAAGTCGATGACACGGGTTGCGGTATTGACCCTAGTAAATGGGATTCAGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGTACGTCTGCGAGCACGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGATCCTTGGTTAATAAGATGGGTGGAGAAATCAAGATTGTCAAAAAGGAGGGACCAGGAACACTAATGCGATTATACCTGCGTCTCAACGCACCCGTGGATACCACAGAGCAACACTGTCAAGTAGATTTTGCTAACAACGGCTTAGTGGTACTTCTTGCACTACATGGCAACATGAGTCGATTAATTACGTCTAAGTGGTTACAGACAAACGGCGTTGTCACTATGGAAGCATCTGAGTGGAATGGATTAACACAAATTCTAAAAGAATTATTTCATGAAAGAACTTCAGCTCATCATAATGATATCGAGTTTGATGCACCTTATCCAGCTCATGAGGTTCTGAAATCCAAATTGCTGAGCATACAGGAATTGACAAACCCGACATTTGTCATTGCTGTTGATATTGATCTACTTGACTTGAGCACAGATATATGGAAGGAACAACTTAACTTCCTTCACAAGTACTACGGCAGAGCGAAATTCATTTGGTTACATAACCATGACTCGGCTAAAATCATAAAGACGGAGCTTCGCAAGAAAGGGCGCATACTAACTGTCAACAAACCTCTTTACAAAGCAAAGATGGTGCATATTTTGGAAGCTGTCATAAACGAAAGAAATGTTGAGGCACAAAAGCAAAATATGATTACTTCGAGACTCACAGGGAAAGAAGGTGATTTGCATGAGAGTCTAGAGATTGATTATACAGCTCATTGTGACGTTGGAAGCTCAGATGGCTCTGACATATCTGAAATTGGTAGTTCTAATCTTGGTACTGCCAATGGAGATAAGCAAATAAAAGAGGTAGTTAGACTCAGTCGACCATCGATATACCAAAAAAGTAGCAGCTTATTAGGATTACATGATGAATATATGGAACATAGTAGTCTTGGTAATGAAGCGTTTATTTCAACAAGAGCAAAAGGTGAAGATTCTGAAGGTAGCGAAACAAATAAGGTTAGTGGTTCAAGTAAAGCTATAAAAGGAAATAAGTCTCTTGAAGGTCTGAGGATATTGCTTGCAGAAGATACCGCAGTAATTCAAAGGGTTGCAACGATAATGCTTGAAAAAATGGGAGCCACTGTTGTTGCTGTAGGTGATGGGCAACAGGCGGTGGATGCCCTAAATGGCACGATCGGTGTTGAAAATTGTAGAAACACAAGAACATCTGAAACTGAGATTCTAAGTTTCCCTTCATATGACTTAATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAAGCAACAAAAGAAATAAGAAAATCAGAAGTGGGAACTGGATTCCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAATGTTTGGAAGTGGGCATGGATGCTTATTTAACAAAGCCAATTGACTTTAAACTGATGGAATCTACCATTCTTTCACTCACAAGAGAGAAAACTTGA 3585 0.4 MFTKCMHVFDRFFLCIATSWNKNITPNSTRKFNRDVEKEEDFQFASTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNTTAEITAAQVKLSEYVIRSHSNLANQAEQVQMYESMRAVTWALFASRKALNSITVKYNNGFVQAFHRDLKDNNTFYIYTDLAHNETNSFAADDEVSNDEEVHSNKSVIWYREQLDPGSGEKIGKAIKIAPENSISIAGLSQVPDGVASWNVSVNKFTDSPLLSAALPVWDSSNKSIVAVVGVTTSLYSVGQLMKELVDKHSGHIYLTSQKGYLLATSTNDPLLTNSRKNPKLKMAVDCDNEVIREGAQWLQKTYGNDFPPSHEVHVENAMLGRQQYYIDSFYLNLNRLPLVGVIILPRKHIMGQADERAFKTLVILISASLCIIVIGCFCILILTNGVSKEMNLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDHLTNEQCATVTQIRKCSTTLLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHTVEIILDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCGNSNFYGGNENFEPKKFGCSPKTRTKQHENHAKKASNSDNKMIIWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLYVCEHGGTGLGLCIVRSLVNKMGGEIKIVKKEGPGTLMRLYLRLNAPVDTTEQHCQVDFANNGLVVLLALHGNMSRLITSKWLQTNGVVTMEASEWNGLTQILKELFHERTSAHHNDIEFDAPYPAHEVLKSKLLSIQELTNPTFVIAVDIDLLDLSTDIWKEQLNFLHKYYGRAKFIWLHNHDSAKIIKTELRKKGRILTVNKPLYKAKMVHILEAVINERNVEAQKQNMITSRLTGKEGDLHESLEIDYTAHCDVGSSDGSDISEIGSSNLGTANGDKQIKEVVRLSRPSIYQKSSSLLGLHDEYMEHSSLGNEAFISTRAKGEDSEGSETNKVSGSSKAIKGNKSLEGLRILLAEDTAVIQRVATIMLEKMGATVVAVGDGQQAVDALNGTIGVENCRNTRTSETEILSFPSYDLILMDCQMPKMDGYEATKEIRKSEVGTGFHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTREKT 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03151 1194 Gene3D - 466 545 - -
Vivi1g03151 1194 ProSiteProfiles Histidine kinase domain profile. 485 745 IPR005467 -
Vivi1g03151 1194 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 591 743 IPR003594 -
Vivi1g03151 1194 CDD REC_hyHK_CKI1_RcsC-like 1053 1186 - -
Vivi1g03151 1194 Gene3D - 1030 1190 - -
Vivi1g03151 1194 PANTHER TWO-COMPONENT HISTIDINE KINASE 32 753 - -
Vivi1g03151 1194 SMART REC_2 1051 1186 IPR001789 GO:0000160
Vivi1g03151 1194 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 465 545 IPR036097 GO:0000155|GO:0007165
Vivi1g03151 1194 SUPERFAMILY CheY-like 1049 1191 IPR011006 -
Vivi1g03151 1194 SMART HKATPase_4 591 745 IPR003594 -
Vivi1g03151 1194 FunFam Histidine kinase 1-like protein 466 545 - -
Vivi1g03151 1194 ProSiteProfiles Response regulatory domain profile. 1052 1190 IPR001789 GO:0000160
Vivi1g03151 1194 CDD HisKA 479 540 IPR003661 GO:0000155|GO:0007165
Vivi1g03151 1194 PRINTS Bacterial sensor protein C-terminal signature 729 742 IPR004358 GO:0016310|GO:0016772
Vivi1g03151 1194 PRINTS Bacterial sensor protein C-terminal signature 705 723 IPR004358 GO:0016310|GO:0016772
Vivi1g03151 1194 PRINTS Bacterial sensor protein C-terminal signature 666 680 IPR004358 GO:0016310|GO:0016772
Vivi1g03151 1194 SMART HisKA_10 478 544 IPR003661 GO:0000155|GO:0007165
Vivi1g03151 1194 Pfam Response regulator receiver domain 1053 1183 IPR001789 GO:0000160
Vivi1g03151 1194 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 533 742 IPR036890 -
Vivi1g03151 1194 Gene3D - 546 746 IPR036890 -
Vivi1g03151 1194 Pfam His Kinase A (phospho-acceptor) domain 479 544 IPR003661 GO:0000155|GO:0007165
Vivi1g03151 1194 MobiDBLite consensus disorder prediction 1021 1041 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03151 Vivi-Chr1 69090050 69095610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03151 8 1191 Histidine Kinase Gene Family AT2G17820 62.375 0.0 1458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi1g03151 HATPase_c 2e-20 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03151 - - gmx:100801970 1834.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03151 1 69090050 69095610 Vivi1g03151 1 69090050 69095610 ECH