Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03140 ATGGCGGAGGAGAGAATCTCAGGTGTGGTGCAATGGTTCAACAGTGGCAAAGGCTTTGGTTTCATCAAACCTGATGACGGCAGCGAAGATCTCTTCGTTCATCAATCATCCATCAGATCTGATGGTTTCCGCACCCTCGCAGAAGGCGATCGTGTCGAATTCACCATCGCCACCGGCGATAATGAAAAAACCAAGGCTGTTGATGTCACCGGTCCTAACGGCGCTCCTCTGCAGTCCAGGCAGGATTCGTATGGCGGTGGAGGCGGCGGTCGCGGATTTGGTGGATTTAGGGGCTCTGAGAGACGTAACGGTGGAGGCGGCGGTGCTGGATGTTACAACTGTGGTGATACTGGCCACATCGCTAGAGAGTGTAACAGGAGCAATAACTCCGGTGGAGGCGGAGGTGCTGGCTGTTACAACTGCGGTGATACTGGCCACATCGCCAGGGATTGCAACCGGATCAATAATTCCGGTGGAGGCGGAGGAGGTGCTTGTTACACCTGCGGCTCTTTTGGTCATATTGCCAGGGATTGCACTCGCGGAGGCAACATTGGAGGTGGATTTGACCGCAGCAGTGGAGGAGCCACTTCTTGCTACAGATGCGGTGGAATCGGGCACATTGCGAGAGACTGCGCTACTCCCAGCGACCGGAGTGGAGGTGGAGGTGGTTGCTATAAGTGCGGTGAAGTTGGTCACATAGCCAGGGATTGCAACATTGAAGGTGGGAGATTCGACGGCGGCAACGGTGGTGGAAGGTTTGGTGGTGGCAACAATGGAAGGTTTGGTGGTGGCAATGGAGGAACCAACACATGCTTCAATTGTGGAAAGCCAGGTCATTTTGCAAGGGAGTGCGTCGAGGCTTCTGGTTGA 870 0.5483 MAEERISGVVQWFNSGKGFGFIKPDDGSEDLFVHQSSIRSDGFRTLAEGDRVEFTIATGDNEKTKAVDVTGPNGAPLQSRQDSYGGGGGGRGFGGFRGSERRNGGGGGAGCYNCGDTGHIARECNRSNNSGGGGGAGCYNCGDTGHIARDCNRINNSGGGGGGACYTCGSFGHIARDCTRGGNIGGGFDRSSGGATSCYRCGGIGHIARDCATPSDRSGGGGGCYKCGEVGHIARDCNIEGGRFDGGNGGGRFGGGNNGRFGGGNGGTNTCFNCGKPGHFARECVEASG 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03140 289 SUPERFAMILY Retrovirus zinc finger-like domains 192 239 IPR036875 GO:0003676|GO:0008270
Vivi1g03140 289 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Vivi1g03140 289 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Vivi1g03140 289 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Vivi1g03140 289 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Vivi1g03140 289 Gene3D - 1 83 IPR012340 -
Vivi1g03140 289 SUPERFAMILY Retrovirus zinc finger-like domains 102 153 IPR036875 GO:0003676|GO:0008270
Vivi1g03140 289 SUPERFAMILY Retrovirus zinc finger-like domains 256 285 IPR036875 GO:0003676|GO:0008270
Vivi1g03140 289 Gene3D - 191 251 - -
Vivi1g03140 289 PANTHER COLD SHOCK DOMAIN PROTEIN 2 157 213 - -
Vivi1g03140 289 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Vivi1g03140 289 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Vivi1g03140 289 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Vivi1g03140 289 SMART csp_8 7 72 IPR011129 GO:0003676
Vivi1g03140 289 ProSiteProfiles Zinc finger CCHC-type profile. 224 237 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 SMART c2hcfinal6 110 126 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 SMART c2hcfinal6 270 286 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 SMART c2hcfinal6 197 213 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 SMART c2hcfinal6 137 153 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 SMART c2hcfinal6 223 239 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 ProSiteProfiles Zinc finger CCHC-type profile. 138 151 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 Gene3D - 136 187 - -
Vivi1g03140 289 ProSiteProfiles Zinc finger CCHC-type profile. 111 124 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 ProSiteProfiles Zinc finger CCHC-type profile. 165 180 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 Gene3D - 99 135 - -
Vivi1g03140 289 Gene3D - 259 289 - -
Vivi1g03140 289 ProSiteProfiles Zinc finger CCHC-type profile. 271 284 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 Pfam Zinc knuckle 164 179 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 Pfam Zinc knuckle 269 284 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 Pfam Zinc knuckle 198 212 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 Pfam Zinc knuckle 137 151 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 Pfam Zinc knuckle 110 124 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 Pfam Zinc knuckle 223 237 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 ProSiteProfiles Zinc finger CCHC-type profile. 198 211 IPR001878 GO:0003676|GO:0008270
Vivi1g03140 289 MobiDBLite consensus disorder prediction 65 99 - -
Vivi1g03140 289 SUPERFAMILY Retrovirus zinc finger-like domains 156 213 IPR036875 GO:0003676|GO:0008270
Vivi1g03140 289 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vivi1g03140 CSD 2.6e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03140 K09250 - tpra:123881414 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03140 1 68858811 68862449 Vivi1g03140 1 68858811 68862449 ECH