Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03139 ATGAATGAATCGAAAAGAAATAACAATGAATGCCAGCCAGCGAAAAAAGTCTCGCCGGTGTTTGAACAAGATCTCAATTATCTTCCTTATGAAAAAGACGAGTCTGAGTTACTGGATGACGGGACAGATTTTGAAAGTTCTTCAGGTTTTGTAGGAAAGAAAAAGAGGGCACCAAGTTACCATGTAGCTAAAATTACTTTATCAGATTTAGTCAAGTACTTTAATATGCCAATTGCAGAAGCTTCAAAAAATCTAAATGTTTGCCTTACTGTTCTCAAAAGCTACTGTTTTGTCTGTGGTAGAGAGAAGAAATATGCTTCTCCTTAG 327 0.3609 MNESKRNNNECQPAKKVSPVFEQDLNYLPYEKDESELLDDGTDFESSSGFVGKKKRAPSYHVAKITLSDLVKYFNMPIAEASKNLNVCLTVLKSYCFVCGREKKYASP 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03139 108 ProSiteProfiles RWP-RK domain profile. 47 108 IPR003035 -
Vivi1g03139 108 PANTHER PROTEIN RKD4 56 96 IPR044607 GO:0003700
Vivi1g03139 108 Pfam RWP-RK domain 64 96 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03139 Vivi-Chr1 68847973 68849471 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03139 20 100 AtRKD Transcription Factor Family AT4G35590 43.158 1.12e-14 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vivi1g03139 RWP-RK 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03139 - - vvo:131608743 224.172