Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03138 ATGGCCGATTTAGTAAAACAGCTCTTAGCAAAACCGATCCAATTAGCCGACCAAGTAAGCAAAGCCGCCGAAGAAGGAAGCTCCTCCTTCAAACAAGAATGCTTAGAACTCAAATCCAAAACCGAAAAACTCGCTTCCCTCCTCCGCCAAGCCGCGAGATCAAGCTCCGATTTATACGAACGCCCAACCCGCCGCATCATCGGCGACACCGAACAAGTCCTCGAAAAAGCGCTAACCTTAGTCCTCAAATGCAAAGTCAACGGTCTCATGAAGCGTGTCTTCAGCATAGTACCCTCCGCTGCTTTCCGCAAAATGTCCTCCCATCTCGAAAACTCCATCGGCGACGTCTCCTGGCTCCTCCGCGTCTCCGCTCCGACGGAGGAGGGGAGCTACGAGTGTCTAGGTCTTCCGCCTATTGCCTCTAATGAACCGATTCTAGGTCTAATTTGGGAGCAGATTGCGATTCTTCATAACGGCTCTGTTGATGATCGATCTGATGCGGCTGCTTCTCTTGTTTCGCTTGTTCGCGATAACGATCGGAACGGGAAATTGATAATTGAGGAAGGTGGAGTTGGTCCTTTGTTGAAGCTTATTAAAGAAGGTAAAAAGGAGGGTCAGGAAAATGCTGCTAAAGCTATTGGGCTTTTGGGTAGGGATGCGGAAAGCGTTGATGTTATGATTCATGCTGGTGTTTGTTCGGTTTTCGCTAAGATTCTTAAAGAAGGTCCTATGAAAGTTCAAGCTGTTGTGGCTTGGGCTGTTTCGGAGCTTGTTTCGAAGAATCCGAAATGTCAAGATGTTTTTGCTCAGCATAATATTGTTAGGTTGCTTGTTAGTCATATCGCGTTTGAAACTGTTCAGGAGCATAGTAAATACGCGATTGTTAGTAATAAGCCGAATTCGATTCATGCTGTTGTGTTGGCGAGTGGTAATAGTAATAGTGGTGATAACTCTGGTTCTAATAATGTGAGAAAAGAGACTGAAGATGAGGTGAAAATTCGGATGCAGCATCCGTTAGGGGATAGGTCTACGAATCAGATGCATAAAGTGGTGGCAAGTACTATGGCAATGCATGCTGCAAATGCGAATAACAACAAGAATCAACAAACCGATGTAGGGAATGAAGTGAGTCTAAACTCTCATTCTCAGGTGGCTGGTAATTCAAATGGGAGCGGGAACGGTAATACGAAGCAAAACTATTCTTATTCTGGGATTAGCATGAAGGGAAGGGAGCTTGAGGATGCTGAGAGTAAGGCTGAGATGAAAGCAATGGCTGCGAAAGCTCTTATGGTTCTAGCAAAGGATAACTCGGGGATTTGTCGTAGTATAACAGAATCAAGGGCTTTGTTATGCTTTGCTATTCTCCTTGAAAAAGGACCTGAAGAAGTGAAGTACCATTCTGCGTTGGCGTTGAAAGAGATTACGGCAGTGGCTGAGAAAGATCCTGAGTTGAGAAGAATGGCATTTAAGCCAAATTCTCCTGCCTGTAAAGCAGTTGTTGATCAAGTGATCGATATTATCGACAAAGAAGATAAGAGGCTTCTGATTCCTTGTGTTAAGGCTATTGGAAGCTTGGCAAGGACATTCAGGGCAACTGAGACAAGGATAATTGGTCCATTGGTTCGACTTCTCGACGAAAGAGAGGCTGAAGTATCCAAAGAAGCTGCAGACTCACTCGCGAAATTTGCCTGCAATGACAACTACCTCCACCTTGATCACTCTAAGGCAATCATAAGCTCTGGCGGTGCAAAACACTTGGTTCAGCTTGTGTATCTTGGGGAGCCGCCAGTTCAATATTCAGCCTTGGTTCTGCTATCCTATATCGCATTGCACGTGCCAGACAGTGAAGAACTTGCTCGGGTTGAGGTTCTTGGAGTTCTTGAATGGGCGTCCAAGCAACTTAACGTGACTCAAGATGAAAATGTCGAGATGTTGTTGCAAGAGTCCAAGAGTAGGCTGGAGCTTTACCAGTCTAGAGGCTCAAGAGGGTTCCAAAAATTACATCAATAG 2010 0.4537 MADLVKQLLAKPIQLADQVSKAAEEGSSSFKQECLELKSKTEKLASLLRQAARSSSDLYERPTRRIIGDTEQVLEKALTLVLKCKVNGLMKRVFSIVPSAAFRKMSSHLENSIGDVSWLLRVSAPTEEGSYECLGLPPIASNEPILGLIWEQIAILHNGSVDDRSDAAASLVSLVRDNDRNGKLIIEEGGVGPLLKLIKEGKKEGQENAAKAIGLLGRDAESVDVMIHAGVCSVFAKILKEGPMKVQAVVAWAVSELVSKNPKCQDVFAQHNIVRLLVSHIAFETVQEHSKYAIVSNKPNSIHAVVLASGNSNSGDNSGSNNVRKETEDEVKIRMQHPLGDRSTNQMHKVVASTMAMHAANANNNKNQQTDVGNEVSLNSHSQVAGNSNGSGNGNTKQNYSYSGISMKGRELEDAESKAEMKAMAAKALMVLAKDNSGICRSITESRALLCFAILLEKGPEEVKYHSALALKEITAVAEKDPELRRMAFKPNSPACKAVVDQVIDIIDKEDKRLLIPCVKAIGSLARTFRATETRIIGPLVRLLDEREAEVSKEAADSLAKFACNDNYLHLDHSKAIISSGGAKHLVQLVYLGEPPVQYSALVLLSYIALHVPDSEELARVEVLGVLEWASKQLNVTQDENVEMLLQESKSRLELYQSRGSRGFQKLHQ 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03138 669 SMART arm_5 177 218 IPR000225 GO:0005515
Vivi1g03138 669 SMART arm_5 570 610 IPR000225 GO:0005515
Vivi1g03138 669 SMART arm_5 436 476 IPR000225 GO:0005515
Vivi1g03138 669 SMART arm_5 219 259 IPR000225 GO:0005515
Vivi1g03138 669 FunFam Armadillo repeat only 2 151 321 - -
Vivi1g03138 669 Pfam Armadillo/beta-catenin-like repeat 183 215 IPR000225 GO:0005515
Vivi1g03138 669 PANTHER ARMADILLO REPEAT ONLY 4 1 661 - -
Vivi1g03138 669 FunFam Armadillo repeat only 4 2 122 - -
Vivi1g03138 669 Gene3D - 410 649 IPR011989 -
Vivi1g03138 669 Gene3D - 149 313 IPR011989 -
Vivi1g03138 669 MobiDBLite consensus disorder prediction 310 329 - -
Vivi1g03138 669 SUPERFAMILY ARM repeat 153 637 IPR016024 -
Vivi1g03138 669 Gene3D - 5 122 IPR036537 GO:0007166
Vivi1g03138 669 MobiDBLite consensus disorder prediction 380 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03138 Vivi-Chr1 68822721 68825255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03138 147 281 U-box Gene Family AT3G46510 30.370 9.27e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03138 - - vvo:131640749 1219.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03138 1 68822721 68825255 Vivi1g03138 1 68822721 68825255 ECH
Vivi2g02899 2 126242595 126245414 Vivi1g03138 1 68822721 68825255 PCT