Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03116 ATGGCCATTAGAAAATCCAACAAGCTACCTCAACCTGATGTTCTCATCAAGCAAATTCTTAAAAGATGTTCAAGCTTTGGCAAAAAACAGGGTTACAATGAAGAGGGTCATCCTGAAGATGTACCAAAAGGTCACTTTGTTGTTTACGTTGGAGAAAACAGAACAAGATATATTGTTCCTATTTCATGGCTGCCTCATCCACAGTTTCAATGTTTGCTTCAAATAGCTGAGGAAGAATTTGGATTCAATCATGACATGGGACTTACAATTCCTTGTGATGAAGTTGTTTTTGAGTATCTTACTTCCTTGATCAGATAA 318 0.3679 MAIRKSNKLPQPDVLIKQILKRCSSFGKKQGYNEEGHPEDVPKGHFVVYVGENRTRYIVPISWLPHPQFQCLLQIAEEEFGFNHDMGLTIPCDEVVFEYLTSLIR 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03116 105 Pfam Auxin responsive protein 28 104 IPR003676 GO:0009733
Vivi1g03116 105 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 27 100 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03116 Vivi-Chr1 68598484 68599428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03116 1 104 Calmodulin-binding Proteins AT3G43120 41.509 2.38e-19 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03116 K14488 - gmx:100500218 184.111