Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03110 ATGAGAACTCGAAATGCGGATTCGTCTTCCAAATCCGTAACCCCTAAGAAGACACCGCCGGCGAAAAAATCCACCGGAGAATCTCCCGTCGCGAAGCGCACGCCTCCATCCAAAACCAGAAACGCCAAGAAGACGGAGGCATCGTCCGCAACCGAACTTATGTCCGATTCCAATCCGGATCAATCCGAGCAGCAGAAATCATTAGCCAGTTCTACTACCGCTACAAAATCTGCAAAGAGGAAAACACCGGGTAAGCCAAGGACAACAGTGGTTGCCGCCACTCCGAATTTGGAAGAGGAATTGGTGGCTGAAGCTGATGAGGCGGCAGAGAAAGTGGCAGAAAATGGAAATGTTAGCGACATTGGTGCAGATGGGAGGGAACAAAAGCCCATGGAAGTGGATGAACCTGTTGTTGGAAAAGTTTGTGAGTTGGGTGAAAAGGGGAAGAGCGTGGAAGACTGTGAATCGATTGTTTCTCAAGAGGATCCTCTTTCTTTTAAACAAGCAGGATGCACTGTCATGGATCTTAATATATCTGTGGCTGATAATGAAGATTGTACTGCTGCAAAGGAAGGAGGGGAAGCATTGAAAGAGGAAGAATTGAATATACCGGAGGAGAAGAGAGAAAAGGAAGAGTTGAAAGCAGACGAGGGAGAAAAAGCAAAGGATGAGTTGAACGATCAAGGAGAGAAAGGAAAAGATGAGTTGAACGATCAAGAAGAGTTTAAAATGCAGGAAAGAGAAAAAGGAAAGGAAGAGTTGCAAGAAGAGGAAGGAAAGAAGGAAGTGGAAGAGTTTAAAATACAGGAAGGAGAAAAAGGAAAGGAAGTGCTGAAAGAACAGGAATTAGAGAAAGGAAAAGAAGAGTTGAAGGAACATGAAGAAGAGAAGGGAAATGAGGTGTTAAAAGAACCTGTAGGAGAGAAAGAAAAAGAAGAGTTTAAAGAACATGAAGCACAAAGAGGAAATGAAGAGTTTAAAGAAGAGAAATTAGAAAAAGCAAAAGGAGAGGAAACAAACATTATTGGACATGAAGAGCACTCTAGTGTAGAGGTTCAAGCCCAACTACAAAAAGAATTTGTTCCTGAAAATTATGGTGTTGAAGGGCCAAAAAGTGGTGAGTTGGTAGATCTTGAAAAACAAGGGAGGATGGAGCTTGAGGAGGAAGATCCAGAGGAAGATCCAGAAGAAGATCCAGAGGAACCGTCCGAAGAAACCGAGACATTGGATGAAGAGCATATCGATTTTGAAGCCATTGCAAAGCAGCGAAAGATTAGAAAAGAGCATGAGATATTTGTTGGTGGGTTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTGTTTCAGAGGATCGGGGAGGTAGTGGAAGTTAGGATGCATAAAAATTCATCAACAAATAAAAATAAGGGCTATGCTTTTGTGAAGTTTGCCATTAAGGAGCACGCAAAAAAAGCTTTGTCTGAAATGAAGAATCCTGTTATACATGGAAAACGATGTGGCACCGCACCTAGTGAGGATAATGATACATTATTCTTGGGAAATATTTGCAATACATGGACAAAAGAAATTATTAAACAGAAGCTGAAGGATTATGGTGTAGAAGGGGTTGAAAACATTACACTCGTACCAGATGTTCAACGTGAAGGCTTTAGCCGGGGCTTTGCATTCCTGGAGTTTTTTTGTCATGCTGATGCTATGCTTGCATACAAGAGACTTCAAAAGCCTGATGTCATCTTTGGTCATGCTGAGCGAACTGCTAAGGTAGCCTTTGCCGAACCGGTACGTGAACCTGGCCCAGAAATAATGGCACAAGTGAAGTCTGTGTTTATTAATGGTCTCCCTCTTCACTGGGAGGAAGATCATGTGAGGGAGCTATTGAAATCTTACGGTGAAATTGTAAAAATTGTTTTGGCGAGGAATATGTCCGCAGCCAAGAGAAAGGATTATGGATTTGTGGATTTTTCTACACATGAAGCTGCTTTAGCTTGTGTCGATGGTGTAAATAAATCAGAATTGGGAGATGGGTCATCGAAGATAAAAGTGAGAGCTAGGCTTTCAAACCCTCTGCCTAAAATGCAGGCTGTTAAGGGTGACATGTGTGGTGGTCTCCGCATTGGTCAGGCTAGGAGTGAAGCTTATCCAAGATCAAAAATAGGTTTTGGGCGGGGGCGAGGAAGACATCCCTTCAGTAACAGGGGAAATTTCAACAAGGGCAGGAGTTTCTATCATCACGGGGGGCGCAGTCAAATTGGAAGTGGTTTTTGGGATGGCCCTGATTTTAGTATGCATCCGGATTTCCATCAGCGGCAATTTGGTCCACAAGGAGCTATGGGGGATGGACATTATGCAGGTAATCTAGGTGGTGCTCCATTTGCTGGTCCATCTAGACATTATTATGATAGAGAATGGTATGGTTTCCCTGATGGAGGCCCTGGTGAGCCTATTCCTCCAAGAAGGCCATACTCTCCAGGTGGACGGTTTTATGGTATCCCTGATGGAGGTCCTGGTGAGCCTATTCCTCCAAGGCCATACTCTCCAGGTGGACGGTTTTATGGTATCCCTGATGGCGGCCCTGGTGAGCCTTTTCCTCCAAGAAGGCCATACTCTCCAGGTGGACGGTTTTATGGTATCCCCGACGGTGGCCCTGGTGAGCCTATTCCTCCAAGAAGGCCTCACGCTCCAGGTGGACGGTTTTATGGTATTCCTGATGGAGGCCCTGTTGAGCCTATTCCTCCAAGAAGGCCATACTCTCCAGGTGGACAGTTTTATGGTATACCTGATAGAGGCCCTGGTGAACCTGTTCCTCCAAGAAGGCCCTATTCTCCAGGGGGACAGTTTGACGTGCCTTTTATGGGAAGGCATGTTGATGATCCATATCTATATGATGACAATATGCGTGGAATAAAACGTCCATTTTATATGACTGACCCTGAACCTGATCACATGGGGCCTAATAGACTTCGCCCACGATTTGATTACGCAGATCCATCTATATTTCACGAAACTCGATACCATGGTTTTGCTGGGGCTGGCAGCAGGCAGTACCCACATGACTATTATGGTTCTCATCATGGCAGAGGTCCATACTCATCTTTCTATGGGGGCGATGGCCCACATGAAGATAGGTACTATTATTAG 3141 0.4486 MRTRNADSSSKSVTPKKTPPAKKSTGESPVAKRTPPSKTRNAKKTEASSATELMSDSNPDQSEQQKSLASSTTATKSAKRKTPGKPRTTVVAATPNLEEELVAEADEAAEKVAENGNVSDIGADGREQKPMEVDEPVVGKVCELGEKGKSVEDCESIVSQEDPLSFKQAGCTVMDLNISVADNEDCTAAKEGGEALKEEELNIPEEKREKEELKADEGEKAKDELNDQGEKGKDELNDQEEFKMQEREKGKEELQEEEGKKEVEEFKIQEGEKGKEVLKEQELEKGKEELKEHEEEKGNEVLKEPVGEKEKEEFKEHEAQRGNEEFKEEKLEKAKGEETNIIGHEEHSSVEVQAQLQKEFVPENYGVEGPKSGELVDLEKQGRMELEEEDPEEDPEEDPEEPSEETETLDEEHIDFEAIAKQRKIRKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRMHKNSSTNKNKGYAFVKFAIKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEIIKQKLKDYGVEGVENITLVPDVQREGFSRGFAFLEFFCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPVREPGPEIMAQVKSVFINGLPLHWEEDHVRELLKSYGEIVKIVLARNMSAAKRKDYGFVDFSTHEAALACVDGVNKSELGDGSSKIKVRARLSNPLPKMQAVKGDMCGGLRIGQARSEAYPRSKIGFGRGRGRHPFSNRGNFNKGRSFYHHGGRSQIGSGFWDGPDFSMHPDFHQRQFGPQGAMGDGHYAGNLGGAPFAGPSRHYYDREWYGFPDGGPGEPIPPRRPYSPGGRFYGIPDGGPGEPIPPRPYSPGGRFYGIPDGGPGEPFPPRRPYSPGGRFYGIPDGGPGEPIPPRRPHAPGGRFYGIPDGGPVEPIPPRRPYSPGGQFYGIPDRGPGEPVPPRRPYSPGGQFDVPFMGRHVDDPYLYDDNMRGIKRPFYMTDPEPDHMGPNRLRPRFDYADPSIFHETRYHGFAGAGSRQYPHDYYGSHHGRGPYSSFYGGDGPHEDRYYY 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03110 1046 CDD RRM_SF 609 683 - -
Vivi1g03110 1046 CDD RRM_SF 511 574 - -
Vivi1g03110 1046 Gene3D - 508 593 IPR012677 -
Vivi1g03110 1046 MobiDBLite consensus disorder prediction 30 79 - -
Vivi1g03110 1046 MobiDBLite consensus disorder prediction 386 411 - -
Vivi1g03110 1046 CDD RRM_SF 431 500 - -
Vivi1g03110 1046 MobiDBLite consensus disorder prediction 190 411 - -
Vivi1g03110 1046 SUPERFAMILY RNA-binding domain, RBD 599 685 IPR035979 GO:0003676
Vivi1g03110 1046 Gene3D - 373 503 IPR012677 -
Vivi1g03110 1046 MobiDBLite consensus disorder prediction 111 137 - -
Vivi1g03110 1046 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 429 507 IPR000504 GO:0003723
Vivi1g03110 1046 MobiDBLite consensus disorder prediction 810 848 - -
Vivi1g03110 1046 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 275 1045 - -
Vivi1g03110 1046 Coils Coil 196 228 - -
Vivi1g03110 1046 SMART rrm1_1 510 587 IPR000504 GO:0003723
Vivi1g03110 1046 SMART rrm1_1 608 683 IPR000504 GO:0003723
Vivi1g03110 1046 SMART rrm1_1 430 503 IPR000504 GO:0003723
Vivi1g03110 1046 FunFam Heterogeneous nuclear ribonucleoprotein Q 594 747 - -
Vivi1g03110 1046 Coils Coil 276 303 - -
Vivi1g03110 1046 MobiDBLite consensus disorder prediction 909 949 - -
Vivi1g03110 1046 MobiDBLite consensus disorder prediction 1 96 - -
Vivi1g03110 1046 Coils Coil 233 257 - -
Vivi1g03110 1046 MobiDBLite consensus disorder prediction 190 345 - -
Vivi1g03110 1046 Gene3D - 599 750 IPR012677 -
Vivi1g03110 1046 SUPERFAMILY RNA-binding domain, RBD 430 574 IPR035979 GO:0003676
Vivi1g03110 1046 FunFam Heterogeneous nuclear ribonucleoprotein Q 509 593 - -
Vivi1g03110 1046 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 511 579 IPR000504 GO:0003723
Vivi1g03110 1046 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 609 675 IPR000504 GO:0003723
Vivi1g03110 1046 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 431 499 IPR000504 GO:0003723
Vivi1g03110 1046 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 509 594 IPR000504 GO:0003723
Vivi1g03110 1046 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 607 687 IPR000504 GO:0003723
Vivi1g03110 1046 MobiDBLite consensus disorder prediction 6 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03110 Vivi-Chr1 68493168 68498252 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03110 431 885 Eukaryotic Initiation Factors Gene Family AT2G23350 22.680 4.52e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03110 1 68493168 68498252 Vivi1g03110 1 68493168 68498252 ECH