Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03109 ATGGATTCTTCTGTCCCACCTGGATTTCGGTTTCATCCGACCGACGGAGAGCTTGTTGGTTATTATCTTAGAAAGAAAGTTGCTTCTCACAAGATTGATCTTGATGTTATCAAAGAAATCGATCTATATCGTATCGAACCATGGGATCTCCAAGAGAGGTGTAGAATTGGGAATGAGGAGCAACATGAATGGTATTTTTTTAGTCACAAAGATAAGAAGTATCCGACGGGGACGAGGACGAACCGAGCTACAATGGTGGGGTTCTGGAAAGCAACAGGAAGAGATAAGTCAGTGTATGAAAGAGCAAAGCTTATTGGAATGAGGAAGACACTTGTTTTCTACAAAGGAAGAGCTCCTAATGGACAGAAAACTGATTGGATCATGCATGAGTATAGGCTTGAAACTGTAGAAAATGCACCTCCACAGGAGGAAGGTTGGGTTGTGTGCAAAGCATTCAAGAAGAAAACCAATGTCCAAACAAAGACTAATGAAATATGGGAACCAAGCAACTTATATGGTATTGAACAAACAAGTGGCATCATCTCAATGCAACCTCAGAGAATTTCATCACAAAATTTCATGTACAAGCAAGATATAGAAGAAGATAACTTAATCTTCATGCATTCACAACAATTGTTACCTCTTCCTACGTTAGAAAGCCTCTCTTCTTTGCCGTTACCAAAGAGACAAAACTCAATGTCAATAATATCAGAAAATAACATCAACAAAACGGAGAAAGTGACTGATTGGAGGGATCTTGACAAGTTTGTAGCTTCTCAGTTGAGTCAAGAAGATCATAGACATGAAACAAACTCAGACATGTCATTGTTGCTGCTTCAAAGTAGTAAAGATGAAGAGATAAAGTTAAGCTCATTTTTAAGTACAAGCTTAGATTGTGACATTGGGATATGTGTATTTGAAAATTAA 927 0.3808 MDSSVPPGFRFHPTDGELVGYYLRKKVASHKIDLDVIKEIDLYRIEPWDLQERCRIGNEEQHEWYFFSHKDKKYPTGTRTNRATMVGFWKATGRDKSVYERAKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENAPPQEEGWVVCKAFKKKTNVQTKTNEIWEPSNLYGIEQTSGIISMQPQRISSQNFMYKQDIEEDNLIFMHSQQLLPLPTLESLSSLPLPKRQNSMSIISENNINKTEKVTDWRDLDKFVASQLSQEDHRHETNSDMSLLLLQSSKDEEIKLSSFLSTSLDCDIGICVFEN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03109 308 SUPERFAMILY NAC domain 4 154 IPR036093 GO:0003677|GO:0006355
Vivi1g03109 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 238 - -
Vivi1g03109 308 Pfam No apical meristem (NAM) protein 6 133 IPR003441 GO:0003677|GO:0006355
Vivi1g03109 308 FunFam NAC domain-containing protein 14 158 - -
Vivi1g03109 308 Gene3D NAC domain 14 159 IPR036093 GO:0003677|GO:0006355
Vivi1g03109 308 ProSiteProfiles NAC domain profile. 5 154 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03109 Vivi-Chr1 68482302 68484542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03109 4 308 NAC Transcription Factor Family AT2G18060 57.103 6.70e-131 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g03109 NAM 5.4e-37 No_clan