LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g03097	ATGGATCCAAACTCATTTTCAGTAGATGATTATAGTCTTACTTCCTTGTTTTTCAATGACGAACTAGAACCTAAATCAATTGATGAACTTTTAGCGGTTTCTACTACTGCTAACAATTTTGGTTCCGAGTTGAATGGATCAGAATCGAATAATGAAACTCGTTCTTTAGGTGCTGAGTTAGGTGACTCGTCCAAAGAGGCTATCACGCTTAGTTCTGAGAAAACCCTTGTTGCTGTAGATTGTGATAGTTCCATAAACACTACTCGTAGCTCAGCCCAAAGAAGTTCGACATACCGAGGGGTTTCAAAGCACAAATTGACAGGTAAATTTGAAGCGAATCTATGGGATCACAATGGTAAGCTAGAGGGAAGTGTCAAGAAAGGGCGACAAGTGTATTTGGGTAGTTATGACGGTGAAGAAAATGCAGCAAGGGCTTATGATTTGGCAGCATTGAAGTACTGGGGACCAACAGCAACCACAAACTTTCCTGTTTCCGATTACGCCAAGGAAATAGAGGAGATGAAACATGAAGGAAAGCGAGACTATATTACTTCTCTGCGAAGGAAAAGCAATGGTTTTTCTAGGGGGACTTCAAAATATCGGGGTGTTACAAGGCACAGGCACAGTGGTAAATGGCAAGCAAGAATTGGCCGAGTTGCTGAAAACAAAGATCGATACTTGGGAACATTTCAATCCGAAGAGGAAGCTGCAGAGGCATATGACATTGCAGCCCTAAAATATAAAGGTGCCAATGCTTTAACTAATTTTGATGCAAGTATATATGATATGGACTATATTTCGAAGAATCCCATTCCGATTGGTCGAGAATCAAAACGCTCGAAACCTTCTCGAGGATCACAGAAGAAAGCTCCTACGAATATTACTGATCAACCACATTGTACCAATGTGAATAGCAGCATCAATTTTCCTCCAATGGCTTATATACCATATGATTCTGCAACACCATATTTTCCATGCAACCCTTTCCACCATTTTCACCCTCCTACCAATGCAGAAACAGGCACATCAAAGTCTTCTGAAACTACAACCAATGCAGGCGCAATACTCACTCCAATGCCAGCAGCAGCTGAGTCATTTCTTTGGCCTGATCAGTTCTATTGA	1122	0.4127	MDPNSFSVDDYSLTSLFFNDELEPKSIDELLAVSTTANNFGSELNGSESNNETRSLGAELGDSSKEAITLSSEKTLVAVDCDSSINTTRSSAQRSSTYRGVSKHKLTGKFEANLWDHNGKLEGSVKKGRQVYLGSYDGEENAARAYDLAALKYWGPTATTNFPVSDYAKEIEEMKHEGKRDYITSLRRKSNGFSRGTSKYRGVTRHRHSGKWQARIGRVAENKDRYLGTFQSEEEAAEAYDIAALKYKGANALTNFDASIYDMDYISKNPIPIGRESKRSKPSRGSQKKAPTNITDQPHCTNVNSSINFPPMAYIPYDSATPYFPCNPFHHFHPPTNAETGTSKSSETTTNAGAILTPMPAAAESFLWPDQFY	373

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g03097	373	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	58	292	-	-
	Vivi1g03097	373	SMART	rav1_2	199	263	IPR001471	GO:0003700\|GO:0006355
	Vivi1g03097	373	SMART	rav1_2	97	169	IPR001471	GO:0003700\|GO:0006355
	Vivi1g03097	373	MobiDBLite	consensus disorder prediction	286	302	-	-
	Vivi1g03097	373	SUPERFAMILY	DNA-binding domain	198	259	IPR016177	GO:0003677
	Vivi1g03097	373	CDD	AP2	198	259	IPR001471	GO:0003700\|GO:0006355
	Vivi1g03097	373	Pfam	AP2 domain	198	249	IPR001471	GO:0003700\|GO:0006355
	Vivi1g03097	373	Pfam	AP2 domain	98	155	IPR001471	GO:0003700\|GO:0006355
	Vivi1g03097	373	CDD	AP2	96	165	IPR001471	GO:0003700\|GO:0006355
	Vivi1g03097	373	Gene3D	AP2/ERF domain	97	165	IPR036955	GO:0003700\|GO:0006355
	Vivi1g03097	373	Gene3D	AP2/ERF domain	198	259	IPR036955	GO:0003700\|GO:0006355
	Vivi1g03097	373	ProSiteProfiles	AP2/ERF domain profile.	97	163	IPR001471	GO:0003700\|GO:0006355
	Vivi1g03097	373	MobiDBLite	consensus disorder prediction	271	302	-	-
	Vivi1g03097	373	ProSiteProfiles	AP2/ERF domain profile.	199	257	IPR001471	GO:0003700\|GO:0006355
	Vivi1g03097	373	SUPERFAMILY	DNA-binding domain	96	165	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g03097	Vivi-Chr1	68317265	68319456	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g03097	70	281	AP2-EREBP Transcription Factor Family	AT5G17430	61.502	1.21e-88	275

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Vivi1g03097		AP2	1.2e-11	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g03097	K09285		-	gmx:100777168	346.665