Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03086 ATGCTTCACCAAACTCACCTTTCACTTTCACTCTTCAATTCTCTCACTACTTCCTCCTCCTCTCTACCTTCTCTTCATCCCTCTCAAGCTGAAACAAAAATGGAGTGTGTGAATGCAGAAACTGCTTTCTCGGATTGTCATGTCCAAAACATAGCTCCTGTTGATGATTTCTCTGTCGATGATTTCCTCAACTTTTCCAACGAAGAAGAACAAGAACAAGAACAAGACATTCTAGAAGAAAAACAACAACCTCAACAAGAACAAAACATTCTAGAAGAAAAACAACAACAAAACCATTTCCATCAACAAAATACCCAAAATGAAAATGAAATTTCACACCCCATAATTACCAACCAGTTTGAATCATTACCTACAACCGAACTCACCGTTCCGGTAGAAGAAGCTGCAAACTTAGAATGGTTATCATATTTCGTTGAAGATTCCTTCTCACAATTCTCCATGACAGAGAATCATCACCATCTTCAACCAAAAGCTCCTGAACCAAACCCCACCTTTTCAACCCCCTCTTTCAAAACTCCGGTACCGGGGAAAGCAAGAAGCAAGAGAACAAGAACCGGAGTTCGTGTATGGCCAGTTTCACTAGTTGATTCATCTTCAACCTCAAGCTCCACTGCTATTTCTTCCTCTTCATCCCACCTCGAGGAATGTTCGAAGCCGCCGGAGAAAAAACCGAAGAGGAGGATGGGTTCGCTGGACGGCGGCGAAGCGAGAGGTGTGCTGCGGCGGTGTAGTCATTGTGGTGTTCAGAGAACTCCTCAGTGGCGAACCGGACCGGCTGGACCGAAAACGCTTTGTAATGCTTGTGGGGTTCGGTATAAGTCGGGTCGGTTGTTACCGGAGTATAGACCCGCTTGTAGCCCCACTTTTTCGAGTGCAATGCATTCTAATCATCACCGGAAGGTTCTGGAGATGCGGCGGAAGAAGGAGGTTGTTCCCGGTTCACCGGTTCAACCGGCTGCTCCCGGTTTATGA 993 0.4572 MLHQTHLSLSLFNSLTTSSSSLPSLHPSQAETKMECVNAETAFSDCHVQNIAPVDDFSVDDFLNFSNEEEQEQEQDILEEKQQPQQEQNILEEKQQQNHFHQQNTQNENEISHPIITNQFESLPTTELTVPVEEAANLEWLSYFVEDSFSQFSMTENHHHLQPKAPEPNPTFSTPSFKTPVPGKARSKRTRTGVRVWPVSLVDSSSTSSSTAISSSSSHLEECSKPPEKKPKRRMGSLDGGEARGVLRRCSHCGVQRTPQWRTGPAGPKTLCNACGVRYKSGRLLPEYRPACSPTFSSAMHSNHHRKVLEMRRKKEVVPGSPVQPAAPGL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03086 330 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 245 305 - -
Vivi1g03086 330 Gene3D - 246 317 IPR013088 GO:0006355|GO:0008270
Vivi1g03086 330 MobiDBLite consensus disorder prediction 205 243 - -
Vivi1g03086 330 Pfam GATA zinc finger 250 284 IPR000679 GO:0006355|GO:0043565
Vivi1g03086 330 MobiDBLite consensus disorder prediction 205 221 - -
Vivi1g03086 330 MobiDBLite consensus disorder prediction 222 239 - -
Vivi1g03086 330 MobiDBLite consensus disorder prediction 155 192 - -
Vivi1g03086 330 PIRSF Txn_fac_GATA_plant 29 323 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vivi1g03086 330 PANTHER GATA TRANSCRIPTION FACTOR 52 317 - -
Vivi1g03086 330 SMART GATA_3 244 298 IPR000679 GO:0006355|GO:0043565
Vivi1g03086 330 Coils Coil 63 83 - -
Vivi1g03086 330 FunFam GATA transcription factor 241 324 - -
Vivi1g03086 330 CDD ZnF_GATA 249 305 IPR000679 GO:0006355|GO:0043565
Vivi1g03086 330 ProSitePatterns GATA-type zinc finger domain. 250 275 IPR000679 GO:0006355|GO:0043565
Vivi1g03086 330 MobiDBLite consensus disorder prediction 68 87 - -
Vivi1g03086 330 ProSiteProfiles GATA-type zinc finger domain profile. 244 280 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03086 Vivi-Chr1 68186196 68187587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03086 118 316 C2C2-Gata Transcription Factor Family AT5G66320 53.333 2.76e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi1g03086 GATA 6.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03086 - - vvo:131608554 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03086 1 68186196 68187587 Vivi2g02962 2 128000743 128002399 ECH
Vivi1g03086 1 68186196 68187587 Vivi1g03086 1 68186196 68187587 ECH
Vivi2g02962 2 128000743 128002399 Vivi1g03086 1 68186196 68187587 PCT