Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03082 ATGGCTGGTTTGTTCTCTCTAGGAGGTGGTAGAGGTAATCAACAAGGAGGTGGAGAGTCACATCAAGGTCAGAATCAGATTCCCCCTCCTCAAGAGACTCTTTTCTGGTACAACAAAAACGATGATGTTTCATCTTATAGAGGAAATTTAGAACTATGGAATCAGCACCAACACCAGCACCAGCACCACCTCCAGCAACATGAACAACAAGGTGAGGAAGGTGTTATACCAACACATGTTGCAAGGCCATTTTTCTCGCGAGATCTGTATGGATTAGGAGTCGGACCGAGTAGGGTTTCGTCAGACGATCAACAACAACAACATCAGTCGTTGAATATGGGGATGAGATCATCTTCATCTGGTGGCGAAGGGATAAGCTGTCAAGATTGCGGTAACCAAGCAAAGAAAGACTGTCCTCACATGAGATGTAGAACTTGTTGCAAGAGTCGTGGATTTCAGTGTCAAACTCATGTGAAAAGCACTTGGGTTCCAGCTTCACGACGCCGTGAAAGACAACAGCAGTTATCATCTTCTTCATCTTTACAAAGAGACATTTCCAAACGCCCAAGAGACTCCAACGCTCTTGTTTCAACTCGCAATTTTCCATCAGGGTTAGAGGAAGCAAATTTTCCTGCTATTGTAAGCTCACCAGCTGAGTTCAGGTGTGTAAGGGTTAGTTCAATAGACGATGCAGATGAGAGGTTTGCATATCAAACGGCTGTCAACATTGGAGGACATTTGTTCAAAGGGATTCTCTATGATTTTGGTCCTGAAAACACTATCAACAACAATAACAATACTTATAATAATAGTAATTACATGATTGGCGAAACCTCGGGCGGTGGCGTTCCCGTTGCTCAACCGTTGAACTTAATCGCCGACTCTGATACCACTGTTGTTTCTTCGGGAGCACTTGTTGATCCGTCGTCCTTGTATTCGGCTCCGATGAACGCCTTCATGTCGGCTAGTGGTACGCAATTCTTCTCTCGTCCAAGATCTTGA 1002 0.4451 MAGLFSLGGGRGNQQGGGESHQGQNQIPPPQETLFWYNKNDDVSSYRGNLELWNQHQHQHQHHLQQHEQQGEEGVIPTHVARPFFSRDLYGLGVGPSRVSSDDQQQQHQSLNMGMRSSSSGGEGISCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPASRRRERQQQLSSSSSLQRDISKRPRDSNALVSTRNFPSGLEEANFPAIVSSPAEFRCVRVSSIDDADERFAYQTAVNIGGHLFKGILYDFGPENTINNNNNTYNNSNYMIGETSGGGVPVAQPLNLIADSDTTVVSSGALVDPSSLYSAPMNAFMSASGTQFFSRPRS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03082 333 MobiDBLite consensus disorder prediction 13 33 - -
Vivi1g03082 333 Pfam Domain of unknown function (DUF702) 124 258 - -
Vivi1g03082 333 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 317 IPR007818 GO:0003700|GO:0006355
Vivi1g03082 333 MobiDBLite consensus disorder prediction 1 33 - -
Vivi1g03082 333 NCBIfam LRP1 C-terminal domain 210 257 IPR006511 -
Vivi1g03082 333 MobiDBLite consensus disorder prediction 95 125 - -
Vivi1g03082 333 MobiDBLite consensus disorder prediction 98 125 - -
Vivi1g03082 333 MobiDBLite consensus disorder prediction 163 183 - -
Vivi1g03082 333 MobiDBLite consensus disorder prediction 163 198 - -
Vivi1g03082 333 NCBIfam putative zinc finger domain, LRP1 type 126 168 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03082 Vivi-Chr1 68058088 68060657 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03082 1 333 C2H2 Transcription Factor Family AT3G51060 42.569 2.91e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vivi1g03082 DUF702 1.4e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03082 - - lja:Lj0g3v0059359.1 333.954