Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi1g03030 | ATGTCGTTGAAGAGTATAGTCCGGGAACTCAAGGGGATGAGAAATGGGATAGGTAGTATATCGAAGCGGGGTGGTGAGAGCAAGCATTGGCTCTCTCGGTCAAAGTCGCATGTAGCTCCGGATGTGACTCCAGTTGAGCCTATTCAGCAGGGACAGTGGGCGAGTCTGCCGCCTGAATTGCTTTTGGATATAATCCGGAGGGTTGAAGAGAGTGAGACGTCTTGGCCTGCGCGTGCTGTTGTTGTGTTTTGTGGTTCGGTATGTAAATCTTGGAGGTCTATTATGAAAGAGATCGTCAAGACTCCTCAGCAATGTGGAAGGATCACGTTTCCTATTTCGTTGAAGCAGCCCGGTCCTCGTGATTATCCAATACAGTGCTTTATTAGGAGGAACAGAGAAACTTCTACATTCGAGTTGTACTTAGGTTTGGTGCCATCGGAGCATGAGAGTAATAAGTTGTTACTAGCCGCCAGAAAGATAAGAAGGGCTATAGGTACCGGCTTTATCATATCCTTGGCTGCAGACGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTGAGGTCTAATTTTTGGGGCACCAAATTCTCTGTATACGATAGTCAACCTTCACATGATGCTGCAGTTCAACCAAAGCATCGTCCAAGTGGGAGATTTAATTCTAAGCAGGTGTCACCAAGAGTTCCAGTATGTAGCAATCTTGTTAGCACCGTTTCCTACGAGCTGAATGCTCTCTGGACTAGAGGGCCAAGAAGAGTGCACTGCACCATGAACTCTATACCTATCTCAGCTATCGAGGAAGGTGGAAATGCCCCAACTCCAACAGCGTTACCTCAAATATTTGGTGAACCTTTTACTCCCTCACCATCACTGAAAGAAAAAAGCCCAATGTCAGATTTGTACTCTGGCAGCCTATCAGAGCTACCAGAACTGACTGAAGGCTCCATCGAGCCCTTGGTACTCAAAAACAAATCTCCCAGATGGCACGAGCAGCTCCAGTGTTGGTGCCTAAACTTTATGGGACGTGTTACAGTCGCATCTGTAAAGAACTTTCAACTCGTAGCTGCTGTTGATCCGTCTCATAATGTTTCGCCTGCGGAGCAAGAAAGGGTAATCTTGCAGTTCGGAAAGATTGGAAAAGATATATTCACCATGGACTACTCTTATCCTCTTTCTGCCTTTCAAGCCTTTGCCATCTGCTTGACAAGCTTTGATACCAAACCAGCCTGCGAGTGA | 1239 | 0.4625 | MSLKSIVRELKGMRNGIGSISKRGGESKHWLSRSKSHVAPDVTPVEPIQQGQWASLPPELLLDIIRRVEESETSWPARAVVVFCGSVCKSWRSIMKEIVKTPQQCGRITFPISLKQPGPRDYPIQCFIRRNRETSTFELYLGLVPSEHESNKLLLAARKIRRAIGTGFIISLAADDFSRASNKYVGKLRSNFWGTKFSVYDSQPSHDAAVQPKHRPSGRFNSKQVSPRVPVCSNLVSTVSYELNALWTRGPRRVHCTMNSIPISAIEEGGNAPTPTALPQIFGEPFTPSPSLKEKSPMSDLYSGSLSELPELTEGSIEPLVLKNKSPRWHEQLQCWCLNFMGRVTVASVKNFQLVAAVDPSHNVSPAEQERVILQFGKIGKDIFTMDYSYPLSAFQAFAICLTSFDTKPACE | 412 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi1g03030 | 412 | MobiDBLite | consensus disorder prediction | 17 | 37 | - | - | |
Vivi1g03030 | 412 | ProSitePatterns | Tub family signature 2. | 397 | 412 | IPR018066 | - | |
Vivi1g03030 | 412 | MobiDBLite | consensus disorder prediction | 204 | 223 | - | - | |
Vivi1g03030 | 412 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 412 | IPR025659 | - | |
Vivi1g03030 | 412 | Gene3D | - | 46 | 100 | - | - | |
Vivi1g03030 | 412 | PRINTS | Tubby superfamily signature | 168 | 184 | IPR000007 | - | |
Vivi1g03030 | 412 | PRINTS | Tubby superfamily signature | 233 | 260 | IPR000007 | - | |
Vivi1g03030 | 412 | PRINTS | Tubby superfamily signature | 369 | 388 | IPR000007 | - | |
Vivi1g03030 | 412 | PRINTS | Tubby superfamily signature | 184 | 208 | IPR000007 | - | |
Vivi1g03030 | 412 | PRINTS | Tubby superfamily signature | 340 | 356 | IPR000007 | - | |
Vivi1g03030 | 412 | PRINTS | Tubby superfamily signature | 322 | 339 | IPR000007 | - | |
Vivi1g03030 | 412 | PRINTS | Tubby superfamily signature | 390 | 412 | IPR000007 | - | |
Vivi1g03030 | 412 | Pfam | Tub family | 114 | 407 | IPR000007 | - | |
Vivi1g03030 | 412 | SUPERFAMILY | F-box domain | 48 | 97 | IPR036047 | GO:0005515 | |
Vivi1g03030 | 412 | Pfam | F-box domain | 53 | 99 | IPR001810 | GO:0005515 | |
Vivi1g03030 | 412 | PANTHER | TUBBY-RELATED | 48 | 410 | - | - | |
Vivi1g03030 | 412 | Gene3D | Tubby Protein; Chain A | 111 | 412 | IPR025659 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi1g03030 | Vivi-Chr1 | 66773234 | 66775881 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi1g03030 | 1 | 412 | TUB Transcription Factor Family | AT2G18280 | 60.706 | 1.11e-175 | 494 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Vivi1g03030 | Tub | 1.5e-101 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi1g03030 | K19600 | - | gmx:100805380 | 683.33 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vivi1g03030 | 1 | 66773234 | 66775881 | Vivi1g03030 | 1 | 66773234 | 66775881 | ECH | |
Vivi1g03030 | 1 | 66773234 | 66775881 | Vivi2g03035 | 2 | 129659322 | 129662863 | ECH | |
Vivi2g03035 | 2 | 129659322 | 129662863 | Vivi1g03030 | 1 | 66773234 | 66775881 | PCT |