Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03030 ATGTCGTTGAAGAGTATAGTCCGGGAACTCAAGGGGATGAGAAATGGGATAGGTAGTATATCGAAGCGGGGTGGTGAGAGCAAGCATTGGCTCTCTCGGTCAAAGTCGCATGTAGCTCCGGATGTGACTCCAGTTGAGCCTATTCAGCAGGGACAGTGGGCGAGTCTGCCGCCTGAATTGCTTTTGGATATAATCCGGAGGGTTGAAGAGAGTGAGACGTCTTGGCCTGCGCGTGCTGTTGTTGTGTTTTGTGGTTCGGTATGTAAATCTTGGAGGTCTATTATGAAAGAGATCGTCAAGACTCCTCAGCAATGTGGAAGGATCACGTTTCCTATTTCGTTGAAGCAGCCCGGTCCTCGTGATTATCCAATACAGTGCTTTATTAGGAGGAACAGAGAAACTTCTACATTCGAGTTGTACTTAGGTTTGGTGCCATCGGAGCATGAGAGTAATAAGTTGTTACTAGCCGCCAGAAAGATAAGAAGGGCTATAGGTACCGGCTTTATCATATCCTTGGCTGCAGACGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTGAGGTCTAATTTTTGGGGCACCAAATTCTCTGTATACGATAGTCAACCTTCACATGATGCTGCAGTTCAACCAAAGCATCGTCCAAGTGGGAGATTTAATTCTAAGCAGGTGTCACCAAGAGTTCCAGTATGTAGCAATCTTGTTAGCACCGTTTCCTACGAGCTGAATGCTCTCTGGACTAGAGGGCCAAGAAGAGTGCACTGCACCATGAACTCTATACCTATCTCAGCTATCGAGGAAGGTGGAAATGCCCCAACTCCAACAGCGTTACCTCAAATATTTGGTGAACCTTTTACTCCCTCACCATCACTGAAAGAAAAAAGCCCAATGTCAGATTTGTACTCTGGCAGCCTATCAGAGCTACCAGAACTGACTGAAGGCTCCATCGAGCCCTTGGTACTCAAAAACAAATCTCCCAGATGGCACGAGCAGCTCCAGTGTTGGTGCCTAAACTTTATGGGACGTGTTACAGTCGCATCTGTAAAGAACTTTCAACTCGTAGCTGCTGTTGATCCGTCTCATAATGTTTCGCCTGCGGAGCAAGAAAGGGTAATCTTGCAGTTCGGAAAGATTGGAAAAGATATATTCACCATGGACTACTCTTATCCTCTTTCTGCCTTTCAAGCCTTTGCCATCTGCTTGACAAGCTTTGATACCAAACCAGCCTGCGAGTGA 1239 0.4625 MSLKSIVRELKGMRNGIGSISKRGGESKHWLSRSKSHVAPDVTPVEPIQQGQWASLPPELLLDIIRRVEESETSWPARAVVVFCGSVCKSWRSIMKEIVKTPQQCGRITFPISLKQPGPRDYPIQCFIRRNRETSTFELYLGLVPSEHESNKLLLAARKIRRAIGTGFIISLAADDFSRASNKYVGKLRSNFWGTKFSVYDSQPSHDAAVQPKHRPSGRFNSKQVSPRVPVCSNLVSTVSYELNALWTRGPRRVHCTMNSIPISAIEEGGNAPTPTALPQIFGEPFTPSPSLKEKSPMSDLYSGSLSELPELTEGSIEPLVLKNKSPRWHEQLQCWCLNFMGRVTVASVKNFQLVAAVDPSHNVSPAEQERVILQFGKIGKDIFTMDYSYPLSAFQAFAICLTSFDTKPACE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03030 412 MobiDBLite consensus disorder prediction 17 37 - -
Vivi1g03030 412 ProSitePatterns Tub family signature 2. 397 412 IPR018066 -
Vivi1g03030 412 MobiDBLite consensus disorder prediction 204 223 - -
Vivi1g03030 412 SUPERFAMILY Tubby C-terminal domain-like 102 412 IPR025659 -
Vivi1g03030 412 Gene3D - 46 100 - -
Vivi1g03030 412 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Vivi1g03030 412 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Vivi1g03030 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Vivi1g03030 412 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Vivi1g03030 412 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Vivi1g03030 412 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Vivi1g03030 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Vivi1g03030 412 Pfam Tub family 114 407 IPR000007 -
Vivi1g03030 412 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
Vivi1g03030 412 Pfam F-box domain 53 99 IPR001810 GO:0005515
Vivi1g03030 412 PANTHER TUBBY-RELATED 48 410 - -
Vivi1g03030 412 Gene3D Tubby Protein; Chain A 111 412 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03030 Vivi-Chr1 66773234 66775881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03030 1 412 TUB Transcription Factor Family AT2G18280 60.706 1.11e-175 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vivi1g03030 Tub 1.5e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03030 K19600 - gmx:100805380 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03030 1 66773234 66775881 Vivi1g03030 1 66773234 66775881 ECH
Vivi1g03030 1 66773234 66775881 Vivi2g03035 2 129659322 129662863 ECH
Vivi2g03035 2 129659322 129662863 Vivi1g03030 1 66773234 66775881 PCT