Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03027 ATGGGAACTGATAGTTGTGAAGTGGTAGAGCCGTTACCGGATCCTCGCTCTTTTAAGGTACATCGTAGATTATGCACAGAACTCAGGAGATTAGTTGGTAGAGTCCTAAGGATATTTCCGCAGATAGAGGAAACGCGCCCTCGGTCCTCATCAGGAATAGCAGCTCTGGTTTTGCTAACTAGTACACTTGATAAAGCCAAACAGCTTCTGCAAAATTGGGCGGATTCTAGTATACTCTACCTGGCGATGACTGGGGAGTCAATACTGTCGAAATGCCAAAAGGCAAGAAAGTCATTAGAGAAAAGCTTAGTCCAGATTCAGGATATAGTTCCTGTTATGTTGGCTGCAGAGATTTCTCGAATAATTGATGATCTTAGGTGTGTGACCTTTTCCCTGGATTCTGTTGATGAAGAGGCTGGAAGGGTTATGAGAGAGTTGCTCCAGCAAGGTCCTCCGACCTCAGATAACGATTCAAAGGAAAATTCAGACATTAAGTCTCTCCTGTTTGTGGCAGCGAGACTTAATATTACATCCGCAACAACCATCATAATAGAGATTAGATCTATTAAGAAGTTATTACAAAAACTTGGACCAAAAGAGGAAGATAAAAAGATGATCTTGAAAAATCTCTTGTATCTTCTGATAACGCATAGGAAGTCAATCGTAGGAGAACAAATGGAGGTCTATTCTCGTCCTGAAGAACCAGCGACAACTGAGAACTCTGGTCGTGATTCTTTATCCTCCAATCATGTGAAGTCAGAGCCGTATTTGAGCCATGATCACTATGGAACTCCTGCAACCGAGCTGGGTAGAGTTGCACCCCCAGAGGAGTACACGTGTCCTATTTCTTTAAGGTTGATTTATGACCCTGTTGTCATTGCTTCAGGAGTAACATACGAAAGGATGTGGATACAGAAATGGTTTGATGAGGGTAATGTTATATGCCCGAAAACGAAAAAGGAATTGTCGCATATGTCGTTGACTCCCAACGTTGCTTTAAAGGAGTTAATATCAAAATGGTGCAAAGCTAATGGAGTCTCCATTCCTAACCCAATCAGACAGGTAGAAGACATTCGCTCGTGGGAAGCTTCTGTGACTTCCATTAGAAGTTTTGGAAGTTCCATGAATGGTTTGAACTTGCCAATGGATATTAGTAACATGTCACTTGGATCGTTAGATAACAGTTATAATTCAGATTCCTCACTTGTGAAGGCTAGTCAAGGCTTAAATCCGAAGTTGGTCAAGACTAGAGGTGGGTCTCGCGGCCAGAAATCTGATTCACAGATACATGACACATATCTGACGCCCTTGTCTAAACTTCACGAGCGTCAATGGGATTCGCAATGCCAAGTCGTCGAAGATATGAAAATAGATTTCAAAAGAAATTACCAAGCGTTTAGCTCTATGTCATCAAGTGAGAATTTGATTGACCCCCTTGTGAGATTTCTGAAAACTGCATATGATAAGCATGACACGAAAGCTCTGAGAGGTGGAAGTCAGTTACTGTTGGAATTTACAAAGTGCTGCAGAAATGGTGTGACAAACTTAAGTGAAGATACTTGCAGTGTGTTGGCAAGTCTCCTAGAGTCAGGAGTGATTGGAGAAGCTCTTGCAATACTGGAAGTGTTGTCGAACCATTGGTCTGATAAAGCTAACATTGCAGCTTCCAGTGCATTGGCCGCTGTTTCAAAGATCCTTGATTCTGCTAACAAAGAGTACCACCGGAAAGCTATTAGAATAATGTGCAATTTTTCTTCCAATACCTCACTTTGTTCTTACATGGTGTCTATTGGGTGCATCTCAAAATTACTACCATTTTTCGAAGACAAGTTCCTCTCAAGAGACTGTATACTTCTACTGAAAAACCTTTTTGATACTGAAAGTGGTAGGGTTTCTGTTGTTGAAACAAAGGGATGCATGTCATGTGTTGTTGAAATACTAAAGTCCGGCACTGACGAGGAAAAGGAACCGGCACTGGCTATTGTACTCTCTTTGTGCTCTCAACGCTTGGATTATTGTGAGTTGGTTATGCACGAGGGTATCATACCATATCTTGTAAATATCTCCAATCTAGGAAACGATAGCACAAAGGCGAAGGCGTTGGAACTACTCCGACTTTTGAGGGATGTGGAGTACGAAGATTGCTTTGAGCCAAATCCCAACAACTCCCGAGATTGTAACGAACACTTTGAAGAAAAGAAACCACCAAAGAAGCCCACGTTTTTTAAGAAACTGTCACAGTTGGGAAAATCAAGTCCAGTCGCATCAAAAAACAAGAGATGA 2283 0.4174 MGTDSCEVVEPLPDPRSFKVHRRLCTELRRLVGRVLRIFPQIEETRPRSSSGIAALVLLTSTLDKAKQLLQNWADSSILYLAMTGESILSKCQKARKSLEKSLVQIQDIVPVMLAAEISRIIDDLRCVTFSLDSVDEEAGRVMRELLQQGPPTSDNDSKENSDIKSLLFVAARLNITSATTIIIEIRSIKKLLQKLGPKEEDKKMILKNLLYLLITHRKSIVGEQMEVYSRPEEPATTENSGRDSLSSNHVKSEPYLSHDHYGTPATELGRVAPPEEYTCPISLRLIYDPVVIASGVTYERMWIQKWFDEGNVICPKTKKELSHMSLTPNVALKELISKWCKANGVSIPNPIRQVEDIRSWEASVTSIRSFGSSMNGLNLPMDISNMSLGSLDNSYNSDSSLVKASQGLNPKLVKTRGGSRGQKSDSQIHDTYLTPLSKLHERQWDSQCQVVEDMKIDFKRNYQAFSSMSSSENLIDPLVRFLKTAYDKHDTKALRGGSQLLLEFTKCCRNGVTNLSEDTCSVLASLLESGVIGEALAILEVLSNHWSDKANIAASSALAAVSKILDSANKEYHRKAIRIMCNFSSNTSLCSYMVSIGCISKLLPFFEDKFLSRDCILLLKNLFDTESGRVSVVETKGCMSCVVEILKSGTDEEKEPALAIVLSLCSQRLDYCELVMHEGIIPYLVNISNLGNDSTKAKALELLRLLRDVEYEDCFEPNPNNSRDCNEHFEEKKPPKKPTFFKKLSQLGKSSPVASKNKR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03027 760 Gene3D - 458 715 IPR011989 -
Vivi1g03027 760 SUPERFAMILY ARM repeat 441 708 IPR016024 -
Vivi1g03027 760 SUPERFAMILY RING/U-box 267 351 - -
Vivi1g03027 760 MobiDBLite consensus disorder prediction 234 253 - -
Vivi1g03027 760 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Vivi1g03027 760 FunFam RING-type E3 ubiquitin transferase 273 345 - -
Vivi1g03027 760 CDD RING-Ubox_PUB 275 327 IPR045210 -
Vivi1g03027 760 MobiDBLite consensus disorder prediction 724 739 - -
Vivi1g03027 760 MobiDBLite consensus disorder prediction 719 760 - -
Vivi1g03027 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 348 IPR013083 -
Vivi1g03027 760 MobiDBLite consensus disorder prediction 226 263 - -
Vivi1g03027 760 MobiDBLite consensus disorder prediction 745 760 - -
Vivi1g03027 760 Pfam U-box domain 275 344 IPR003613 GO:0004842|GO:0016567
Vivi1g03027 760 PANTHER U BOX DOMAIN-CONTAINING 22 713 - -
Vivi1g03027 760 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03027 Vivi-Chr1 66759401 66763277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03027 15 711 U-box Gene Family AT4G36550 38.952 5.30e-134 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03027 - - gmx:100798951 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03027 1 66759401 66763277 Vivi1g03027 1 66759401 66763277 ECH