Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03021 ATGATGCATCATTGTTGCAGTAGCTCTCAGCAAGGTCACATAATGGGAGGAGGAGGAGGAACATGCACATGCGGTATGTTTCATCCACAAACCAACTCTAACTACTCCATGATTTTCTCTAACTACCAAAACCATGATCATTACGACCAATACGATTCCTACTCCTACACTTCTCCATCTTCTTCTGTTGACTGTACACTCTCCCTTGCTACCCCTTCCACGCGTTTATCTGAAGACCAAGAGAAACGAACCCGTCGCTCTTCTCTTACCAAATTCTGGAACAATAATACTAACCATTCAAATTCAAACTCAAACTCAAACTCAAACTCAAAACACCATTCTCAATCTCAAAACAAATCAAACCGAGGAAACAACATTGGTAATAACTCCAACAATGATTCTCTTCTCGCTCGTCGATGTGCTAGCTGTGACACCACTTCTACACCTCTCTGGAGAAATGGTCCTCGTGGCCCAAAGTCACTATGCAATGCTTGTGGGATTAGATACAAGAAAGAAGAACGAAGAGCGAATGCTGCCACGTCAGCCGCGACAACAGGCGGTGTAGTGGATTCAAGCAGCCTCTACAGCAACAACAACAATAACAACGGTGCATGGTACGGACAACCGCAAAGTCAAATGTACGGGAACGAGTTACGGTTCATGGAGGATTCAGATGTAGAATCAGAGAATGGGATTCCGAATTTTCTATCTTGGAGACTCAACACGAGTCTTGTTCATGATTACACCAGATGA 753 0.4382 MMHHCCSSSQQGHIMGGGGGTCTCGMFHPQTNSNYSMIFSNYQNHDHYDQYDSYSYTSPSSSVDCTLSLATPSTRLSEDQEKRTRRSSLTKFWNNNTNHSNSNSNSNSNSKHHSQSQNKSNRGNNIGNNSNNDSLLARRCASCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAATSAATTGGVVDSSSLYSNNNNNNGAWYGQPQSQMYGNELRFMEDSDVESENGIPNFLSWRLNTSLVHDYTR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03021 250 MobiDBLite consensus disorder prediction 73 131 - -
Vivi1g03021 250 MobiDBLite consensus disorder prediction 89 131 - -
Vivi1g03021 250 ProSitePatterns GATA-type zinc finger domain. 140 165 IPR000679 GO:0006355|GO:0043565
Vivi1g03021 250 Pfam GATA zinc finger 140 174 IPR000679 GO:0006355|GO:0043565
Vivi1g03021 250 SMART GATA_3 134 186 IPR000679 GO:0006355|GO:0043565
Vivi1g03021 250 Gene3D - 136 188 IPR013088 GO:0006355|GO:0008270
Vivi1g03021 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 176 - -
Vivi1g03021 250 ProSiteProfiles GATA-type zinc finger domain profile. 134 170 IPR000679 GO:0006355|GO:0043565
Vivi1g03021 250 CDD ZnF_GATA 139 171 IPR000679 GO:0006355|GO:0043565
Vivi1g03021 250 PANTHER GATA TRANSCRIPTION FACTOR 18 20 250 IPR044272 GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03021 Vivi-Chr1 66495797 66496998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03021 23 250 C2C2-Gata Transcription Factor Family AT3G50870 43.463 9.40e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi1g03021 GATA 2.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03021 - - jre:108997534 202.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03021 1 66495797 66496998 Vivi1g03021 1 66495797 66496998 ECH
Vivi2g03053 2 130048890 130050530 Vivi1g03021 1 66495797 66496998 PCT