Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03012 ATGTCATTGAAAAGTATAGTCAGCGAACTGAAGGGGATTAAAAATAGATTATCAAAGCTCTGCCGTGGTTCGAAATCAGACGTTGTTGCTATAACTCCAACTGAACCTATTCAGCAGGGACAATGGGCGAGTCTTCCACCCGAATTGCTTTCGGACATCATACGTAGGCTCGAAGAGAGTGAGACATCTTGGCCTGAGCGTACTGCTCTTATCTTTTGTGCTTCGGTATGTAAATCATGGAGGTCCGTTACGAAAGAGATCATCAAGGGTCCTCAGCAACATGGACAGATCACATTTCCTATTTCATTGAAACTGCCCGGTCCCAGCGTGTATGCGATGCGCTGCTTTATTAAGAGGAACAAAAAAACTTCTACATTTCTGTTGTACTTAGACTCAGTGCCAGCTGAGAATGAGAGTAGTAAGTTGTTATTAGCCGCGAAAAGGATAAGAAGGACCAAATTTGTGATATCCTTGGCAGCAGATGATTTTTCTCGAGCCAGGGACAAATATGTTGGTAAACTGAGGTCTAATTTTTGGGGCACGAAGTTCACTATATACGACGGCCATCCTTCAATATTCGATGAAACTTCTTCACCTTCACGAGAACCGAAGGGAAAACGTCCGATGAAAGATACATTCTCTGTAAGTCTGTCAGAGCCGTTGGAACGGAAATATAATGCTCCGGGATGGGATGAGCAGCGTCTGTTACGTTTTCTAGACGACAAGGACTGTGCTGTTGTGTCATCTATAAGAAACTATGAACTTTTAGCTGTTCTTAATGGGTCTCGTAATGTTTCTCCTTTAGAGCAAGAGAATGTGATCTTGCATTTTGGGAAGACTCCTACAAAAGATATATATATCATGGATTACTATTATCCACTCTCTGCCTTTCAAGCATTTGCCATCTGCTTGACGGCAATGTGA 924 0.4253 MSLKSIVSELKGIKNRLSKLCRGSKSDVVAITPTEPIQQGQWASLPPELLSDIIRRLEESETSWPERTALIFCASVCKSWRSVTKEIIKGPQQHGQITFPISLKLPGPSVYAMRCFIKRNKKTSTFLLYLDSVPAENESSKLLLAAKRIRRTKFVISLAADDFSRARDKYVGKLRSNFWGTKFTIYDGHPSIFDETSSPSREPKGKRPMKDTFSVSLSEPLERKYNAPGWDEQRLLRFLDDKDCAVVSSIRNYELLAVLNGSRNVSPLEQENVILHFGKTPTKDIYIMDYYYPLSAFQAFAICLTAM 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03012 307 Pfam Tub family 103 202 IPR000007 -
Vivi1g03012 307 Pfam Tub family 212 306 IPR000007 -
Vivi1g03012 307 Pfam F-box domain 42 87 IPR001810 GO:0005515
Vivi1g03012 307 Gene3D - 35 87 - -
Vivi1g03012 307 SUPERFAMILY F-box domain 35 86 IPR036047 GO:0005515
Vivi1g03012 307 Gene3D Tubby Protein; Chain A 101 212 IPR025659 -
Vivi1g03012 307 PANTHER TUBBY-RELATED 196 305 - -
Vivi1g03012 307 SUPERFAMILY Tubby C-terminal domain-like 92 306 IPR025659 -
Vivi1g03012 307 PRINTS Tubby superfamily signature 154 170 IPR000007 -
Vivi1g03012 307 PRINTS Tubby superfamily signature 170 194 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03012 Vivi-Chr1 66404241 66405773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03012 193 307 TUB Transcription Factor Family AT2G18280 40.833 1.73e-19 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vivi1g03012 Tub 4.9e-25 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03012 K19600 - mtr:11406729 322.013