Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03001 ATGTCACACAACTCTTCCCCTGATGATGCCACACCTGATAATGCCACTCCTGATGATGCCGATGGATCATCTTCACGTTCATCGCAAAAATCATCGCCTTCTGGAAATGGAAACCAATCATCATCATCCAAGGGAGGTTCGTCGAATGACAAATCTTCTAACCGCGGTAACAATAAGGGTGATGACAGTTCCGTTATAGTTGGAGCTGCTATTGGATCTGCATTATTCGTTCTTCTCTTCGTTGCCGTGTGTTTCGTTTGTTGTAGGAAGAAGAGGAGAAAACAAAATTACTATTATGGTCCTGGTCCACATGGAGATCCTTCCCTTGCAAGAGGGAGTAATTACTACCACAGTGGACCACATCCTCATCCAAATTGGCAAGGAGGTCCAGGTCCAGGTCCAGTTCCACATGGAATGGAACATGTAGTTAGAGTTCAACATACACCAAATGGAAGTGGAGTTTGGGGTGCACCACATCCTATGATGAATAGCGGCGAAATGAGTGGAAACTATTCGTATGGAATGGCTCCGCCGGGCGCTTTGCCTCCTCCTTCTCCAGGCTTATCGCTTACTCTCAAGGGTGGTACATTCAGTTACGAAGAATTGGCGTCGGCTACTAAAGGTTTTGCTAATGAGAATATTATAGGACAAGGTGGTTTTGGTTATGTTCATAAGGGAATATTGCCTAATGGAAAGGAAATTGCTGTCAAAAGTTTGAAATCGGGTAGTGGACAGGGCGAACGTGAGTTCCAAGCTGAGATTGATATTATTAGTCGTGTTCATCATCGTCATCTTGTTTCGCTTGTTGGATATTGTGTTTGTGGTGGACAAAGAATGTTGGTCTATGAGTTTGTTCCAAATCAAACTTTGGAACATCATCTTCATGGAAAGGGTGTGCCTACTATGGATTGGCCTACTAGAATGAAAATTGCGCTAGGATCTGCTAGAGGGCTTGCTTACCTTCATGAAGATTGTAGTCCTCGCATTATTCACCGTGATATTAAGGCTTCTAATGTTCTAATTGATGATAGCTTCGAAGCCAAGGTGGCTGATTTTGGATTGGCTAAGTTGACTACCGATACTAATACTCACGTCTCAACTCGTGTTATGGGAACATTCGGGTATATGGCACCAGAATATGCATCTAGTGGAAAACTGACAGAGAAATCTGATGTTTTCTCATTTGGCGTCATGCTACTAGAACTCTTAACCGGGAAGAGACCTTTGGATTTAAGCAATGCCATGGACGAAAGTTTAGTCGACTGGGCTCGACCACTCTTGAGTCAAGCATTGGAAGAGGATGGAAACTTCGCAGAGTTGGTGGATCCATTTTTGGAAGGAAACTACAACAATCAAGAAATGATAAGACTGGCAGCTTGTGCTTCTAGTAGCATTCGTCATTCGGCTAAGAAGCGTTCCAAAATGAGCCAGATAGTAAGAGCATTAGAAGGAGATGTGTCACTAGAGGATTTGAAGGAAGGGATGATAAAAGCCTCAGGCCATAGCAGTGCTTATACTTCTTCAGGCTCAGAATATGATACAATGCAATACAATGCAGACATGATGAAGTTTAGACAAGCAATAATGTCAAGTCAAGAATTTGCCGATAGCGGCGAGATCACTAGTAAGGAGATGGGTCGTCGCTAG 1647 0.4341 MSHNSSPDDATPDNATPDDADGSSSRSSQKSSPSGNGNQSSSSKGGSSNDKSSNRGNNKGDDSSVIVGAAIGSALFVLLFVAVCFVCCRKKRRKQNYYYGPGPHGDPSLARGSNYYHSGPHPHPNWQGGPGPGPVPHGMEHVVRVQHTPNGSGVWGAPHPMMNSGEMSGNYSYGMAPPGALPPPSPGLSLTLKGGTFSYEELASATKGFANENIIGQGGFGYVHKGILPNGKEIAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCVCGGQRMLVYEFVPNQTLEHHLHGKGVPTMDWPTRMKIALGSARGLAYLHEDCSPRIIHRDIKASNVLIDDSFEAKVADFGLAKLTTDTNTHVSTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVMLLELLTGKRPLDLSNAMDESLVDWARPLLSQALEEDGNFAELVDPFLEGNYNNQEMIRLAACASSSIRHSAKKRSKMSQIVRALEGDVSLEDLKEGMIKASGHSSAYTSSGSEYDTMQYNADMMKFRQAIMSSQEFADSGEITSKEMGRR 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03001 548 SUPERFAMILY Protein kinase-like (PK-like) 190 482 IPR011009 -
Vivi1g03001 548 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 73 528 IPR047117 -
Vivi1g03001 548 Gene3D Transferase(Phosphotransferase) domain 1 285 497 - -
Vivi1g03001 548 FunFam proline-rich receptor-like protein kinase PERK1 187 284 - -
Vivi1g03001 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 329 341 IPR008271 GO:0004672|GO:0006468
Vivi1g03001 548 ProSitePatterns Protein kinases ATP-binding region signature. 215 237 IPR017441 GO:0005524
Vivi1g03001 548 MobiDBLite consensus disorder prediction 1 59 - -
Vivi1g03001 548 SMART serkin_6 209 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03001 548 ProSiteProfiles Protein kinase domain profile. 209 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03001 548 FunFam Proline-rich receptor-like protein kinase PERK1 285 493 - -
Vivi1g03001 548 Gene3D Phosphorylase Kinase; domain 1 189 284 - -
Vivi1g03001 548 Pfam Protein tyrosine and serine/threonine kinase 212 410 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03001 Vivi-Chr1 65765573 65769265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03001 197 538 Trihelix Transcription Factor Family AT1G70460 60.058 8.26e-146 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vivi1g03001 PK_Tyr_Ser-Thr 4e-46 CL0016