Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02995 ATGTCACACAACTCTTCCCCTGATGATGCCACACCTGATAATGCCACTCCTGATGATGCTGATGGATCATCTTCACGGTCAGCGCAAAAATCATCGCCTTCTGGAAATGGAAACCAATCATCATCATCCAAGGGAGGTTCGTCGAATGACAAATCTTCTAACCGCGGTAACAATAAGGGTGACGACAGTTCCGTTATAGTTGGAGCTGCTATTGGATCTGCATTATTCGTTCTTCTCTTTGTTGCCGTGTGTTTCGTTTGTTGTAGGAAGAAGAGGAGAAAACAAAATTACTATTATGGTCCTGGTCCACATGGAGATCCTTCCCTTGCAAGAGACTACTTATTTCGTACTTCAGAGCAAGATCATTCATCGCAATGGAGTAATTACTACCACAGTGGACCACATCCTCATCCAAATTGGCAAGGAGGTCCAGGTCCAGGTCCAGTTCCACATGGAATGGAACATGTAGTTAGAGTTCAACATACACCAAATGGAAGTGGAGTTTGGGGTGCACCACATCCTATGATGAATAGCGGCGAAATGAGTGGAAACTATTCGTATGGAATGGCTCCGCCGGGCGCTTTGCCTCCTCCTTCTCCAGGCTTATCGCTTACTCTCAAGGGTGGTACATTCAGTTATGAAGAATTGGCGTCGGCTACTAAAGGTTTTGCTAATGAGAATATTATAGGACAGGGTGGTTTTGGTTATGTTCATAAGGGAATATTGCCTAATGGAAAGGAAATTGCTGTCAAAAGTTTGAAATCGGGCAGTGGACAAGGCGAGCGTGAGTTCCAAGCTGAGATTGATATTATTAGTCGTGTTCATCATCGTCATCTTGTTTCGCTTGTTGGATATTGTGTTTGTGGTGGACAAAGAATGTTGGTCTATGAATTTGTTCCAAATCAAACTTTGGAACATCACCTTCATGGAAAAGGTGTGCCTACTATGGATTGGCCTACTAGAATGAAAATCGCACTAGGATCTGCTAGAGGGCTTGCTTACCTTCATGAAGATTGTAGTCCTCGCATTATCCATCGTGATATTAAGGCTTCTAATGTTCTAATTGATGATAGCTTCGAAGCCAAGGTGGCTGATTTTGGATTGGCTAAGTTGACTACCGATACTAATACTCACGTCTCAACTCGTGTTATGGGAACATTCGGGTATATGGCACCAGAATATGCATCTAGTGGAAAACTGACAGAGAAATCTGATGTTTTCTCATTTGGCGTCATGCTACTAGAACTCTTAACCGGGAAGAGACCTTTGGATTTAAGCAATGCCATGGACGAAAGTTTAGTCGACTGGGCTCGACCACTCTTGAGTCAAGCATTGGAAGAGGATGGAAACTTCGCAGAGTTGGTGGATCCATTTTTGGAAGGAAACTACAACAATCAAGAAATGATAAGACTGGCAGCTTGTGCTTCTAGTAGCATTCGTCATTCGGCTAAGAAGCGTTCCAAAATGAGCCAGATAGTAAGAGCATTAGAAGGAGATGTGTCACTAGAGGATTTGAAGGAAGGGATGATAAAAGCCTCAGGCCATAGCAGTGCTTATACTTCTTCAGGCTCAGAATATGATACAATGCAATACAATGCAGATATGATGAAGTTTAGACAAGCAATAATGTCAAGTCAAGAATTTGCCGATAGCGGCGAGATCACTAGTAAGGAGATGGGTCGTCGCTAG 1689 0.4322 MSHNSSPDDATPDNATPDDADGSSSRSAQKSSPSGNGNQSSSSKGGSSNDKSSNRGNNKGDDSSVIVGAAIGSALFVLLFVAVCFVCCRKKRRKQNYYYGPGPHGDPSLARDYLFRTSEQDHSSQWSNYYHSGPHPHPNWQGGPGPGPVPHGMEHVVRVQHTPNGSGVWGAPHPMMNSGEMSGNYSYGMAPPGALPPPSPGLSLTLKGGTFSYEELASATKGFANENIIGQGGFGYVHKGILPNGKEIAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCVCGGQRMLVYEFVPNQTLEHHLHGKGVPTMDWPTRMKIALGSARGLAYLHEDCSPRIIHRDIKASNVLIDDSFEAKVADFGLAKLTTDTNTHVSTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVMLLELLTGKRPLDLSNAMDESLVDWARPLLSQALEEDGNFAELVDPFLEGNYNNQEMIRLAACASSSIRHSAKKRSKMSQIVRALEGDVSLEDLKEGMIKASGHSSAYTSSGSEYDTMQYNADMMKFRQAIMSSQEFADSGEITSKEMGRR 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02995 562 Gene3D Transferase(Phosphotransferase) domain 1 299 511 - -
Vivi1g02995 562 FunFam proline-rich receptor-like protein kinase PERK1 201 298 - -
Vivi1g02995 562 FunFam Proline-rich receptor-like protein kinase PERK1 299 507 - -
Vivi1g02995 562 MobiDBLite consensus disorder prediction 1 59 - -
Vivi1g02995 562 SMART serkin_6 223 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02995 562 ProSitePatterns Protein kinases ATP-binding region signature. 229 251 IPR017441 GO:0005524
Vivi1g02995 562 Pfam Protein tyrosine and serine/threonine kinase 226 424 IPR001245 GO:0004672|GO:0006468
Vivi1g02995 562 SUPERFAMILY Protein kinase-like (PK-like) 204 496 IPR011009 -
Vivi1g02995 562 ProSiteProfiles Protein kinase domain profile. 223 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02995 562 Gene3D Phosphorylase Kinase; domain 1 203 298 - -
Vivi1g02995 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 343 355 IPR008271 GO:0004672|GO:0006468
Vivi1g02995 562 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 73 542 IPR047117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02995 Vivi-Chr1 65619407 65623094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02995 211 552 Trihelix Transcription Factor Family AT1G70460 60.058 2.08e-145 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vivi1g02995 PK_Tyr_Ser-Thr 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02995 - - gmx:100805872 705.286