Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02986 ATGGTTGATTTAGACAATGTTTCTACACCTTCCGGAGGAGAAGCTAGCATCTCTTCCTCTGGTAACAATAATAACAATAACCATAACAACCAAACAACCCCTCCAAAACCCACTAAGAAAAAACGAAACCTCCCAGGAATGCCAGATCCGGAAGCAGAGGTGATAGCTTTGTCTCCGACGACTCTGTTAGCGACGAATAGATTTGTGTGTGAAATATGCAACAAAGGTTTTCAGAGGGATCAGAATCTTCAACTTCATAGGAGAGGTCATAATCTGCCGTGGAAACTGAGGCAGAGGTCGAGTAAGGAAGTTAGGAAGAGGGTTTATGTTTGTCCGGAACCGAGCTGTGTTCATCATGATCCTTCTAGAGCTTTGGGCGATCTAACGGGGATTAAAAAGCACTTTTGTAGAAAACACGGTGAGAAGAAGTGGAAATGCGATAAGTGTTCTAAGAAATATGCTGTTCAATCGGATTGGAAAGCGCACTCTAAAGTTTGTGGTTCTAGAGAGTATAAATGCGATTGTGGAACCGTTTTTTCCAGGAGGGATAGTTTCATAACGCATAGAGCTTTTTGTGATGCGTTGGCAGAGGAAAATGCGAAATCGCAGACTCAAACTGTTGTGAAAGCTAGTTCAGAATCTGATTCTAAGGTTTTGACTGGAGATTCATTGCCTCCACCGCCGCCGCCTCCGTTGCCGGTGGTGACTAGTACTACCACAGCGGCAGTAGCAACGACTCCTCAGTCAAACAGTGGTGTGTCCTCTGCTTTGGAGACTCAGAAGCTAGATTTACCAGAAAATCCGCCTCAAATCATAGAGGAGACACAACCACAACCACAACCAGTTGTCGTTGCTACTACTACTTTAAATGCGAGTGGTAGTAGCAGCAGTACTAGCTCAACAAGCAATGGTCGTCCTTCTACTAGCAGCGGTGTGTTTGCAAGTTTGTTTGCATCTTCAACAGCTTCAACTTCTGCGAGTCTACAATCTCAAACACCAGCATTCACTGATTTAATTAGGTCCATGGGAGTTCCAGATGTTCGCCCTACTGATTTCTCAACTCCTCCACCGTCCGAGGCCATATCCCTTTGCCTCTCTTCCAATCACGGATCATCCATTTTTGGAACAGGTGGCCAGGAGTGCCGCCAGTACGTGCCTACACATCAGCCGCCTGCTATGTCAGCTACTGCATTACTTCAGAAAGCTGCTCAAATGGGTGCTGCAGCAACAAATGCCTCTTTGCTTCGCGGGCTTGGAATCGTGTCGTCTTCCGCTTCCACTTCAACAGGTCAGCAAGATAGCCTTCATTGGGGTCTCGGCCAAGTGGAACAGGAGAGTGCTGGTTTAGTCCACGCTGGACTTGGACTAGGTCTTCCATGTGACAGTGACTCTGGACTAAAGGAATTGATGTTGGGGACTCCGTCATTGTTTGGTCCTAAGCAAACAACTCTCGACTTTCTAGGATTGGGGATGGCTGCAGGCGGCAGCGCCGGTGGAGGCTTGTCAGCACTTATCACATCAATCGGCGGCAGCAGCGGTTTGGATGTTACTACAGCAGCCGCATCTTTCGGTAACGGAGAATACTCCGGCAAAGATATTGGTAGAAGCTCATGA 1614 0.4727 MVDLDNVSTPSGGEASISSSGNNNNNNHNNQTTPPKPTKKKRNLPGMPDPEAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGSREYKCDCGTVFSRRDSFITHRAFCDALAEENAKSQTQTVVKASSESDSKVLTGDSLPPPPPPPLPVVTSTTTAAVATTPQSNSGVSSALETQKLDLPENPPQIIEETQPQPQPVVVATTTLNASGSSSSTSSTSNGRPSTSSGVFASLFASSTASTSASLQSQTPAFTDLIRSMGVPDVRPTDFSTPPPSEAISLCLSSNHGSSIFGTGGQECRQYVPTHQPPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASTSTGQQDSLHWGLGQVEQESAGLVHAGLGLGLPCDSDSGLKELMLGTPSLFGPKQTTLDFLGLGMAAGGSAGGGLSALITSIGGSSGLDVTTAAASFGNGEYSGKDIGRSS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02986 537 Pfam Zinc finger, C2H2 type 68 90 IPR013087 -
Vivi1g02986 537 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Vivi1g02986 537 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Vivi1g02986 537 MobiDBLite consensus disorder prediction 236 256 - -
Vivi1g02986 537 MobiDBLite consensus disorder prediction 290 309 - -
Vivi1g02986 537 MobiDBLite consensus disorder prediction 202 219 - -
Vivi1g02986 537 MobiDBLite consensus disorder prediction 202 256 - -
Vivi1g02986 537 Gene3D Classic Zinc Finger 48 114 - -
Vivi1g02986 537 Gene3D Classic Zinc Finger 122 203 - -
Vivi1g02986 537 MobiDBLite consensus disorder prediction 1 51 - -
Vivi1g02986 537 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Vivi1g02986 537 FunFam protein indeterminate-domain 12-like 47 115 - -
Vivi1g02986 537 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
Vivi1g02986 537 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 495 IPR031140 -
Vivi1g02986 537 SMART c2h2final6 144 164 IPR013087 -
Vivi1g02986 537 SMART c2h2final6 109 139 IPR013087 -
Vivi1g02986 537 SMART c2h2final6 68 90 IPR013087 -
Vivi1g02986 537 MobiDBLite consensus disorder prediction 9 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02986 Vivi-Chr1 65294715 65297993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02986 2 535 IDZ Gene Family AT3G50700 54.104 5.32e-173 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g02986 zf-C2H2 0.0055 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02986 K25869 - gmx:100806404 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02986 1 65294715 65297993 Vivi1g02986 1 65294715 65297993 ECH