LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g02966	ATGGACCAGGCTGAATTAACCACCGATCAGGTTCTGAGTAGGGACATTCCATGGGAGACCTACATGTCCACCAAGCTGATCTCCGGCACTAGCCTTCAGCTCTTGAGGCGCTATGATCACCGATCGGAGAGTCAGAGAGCTCAGTTGCTCGATGATGATGGTCCGGCTTATGTTCGCGTGTTTGTTCATGTTTTGCGTGATATTTTCAAAGAGGATACTGTTGAGTATGTTTTGGCTCTGATAGATGAAATGCTGACAGCGAACCCAAAAAGAGCAAGACTGTTTCATGACAATGCCCTTGCTGATGATGATACTTATGAGCCTTTCCTAAGATTGCTTCGCAAAGGAAATTGGTTTGTACAAGAGAAAAGTTGTAAGATCCTTGCTTTAATAGTCAGTGTCAGGCCAAAAAATCAGAATGGCAATGCTTCAAATGGAGGAGCATCAAATGAAAAGAAATCAATTACCTCTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGAGCAGCTGAAGAAACCTTCTCATCCTACTCGTGGAGTTCCAACAGCTATCAATTGCCTATCAACTCTACTTAAGGAACCTGTTGTCAGGTCTTCCTTTGTTCAAGCCGATGGGGTCAAGTTGCTTGTGCCATTGATTTGTCCAGCATCCACTCAACAATCTATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTGTCATATTATGAGCCTGCAATTGAATATTTGGCTACTTCAAGGACCCTTCCAAGACTTATTGATGTTGTTAAGAGCTCTACAAAAGAAAAGGTTGTTAGAGTTGTTGTCTTGACACTCAAAAACTTGATGTCGAAAGGGACATTGGGTGCTCAGATGGTTGATCTCCAGCTTCCTCAGGTTGTTCAAAGTTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCGCTGAATTCCCTTGAAGAAGGGCTTAAGGATAACATCAAGAAGCTTAGTTCTTTTGATAAGTACAAGCAAGAAGTTCTCCTCGGCAATCTAGATTGGTCTCCCATGCACAAAGATCCCATATTTTGGCGAGAAAATATAACCAATTTTGAAGATCATGATTTCCAGATTCTAAGGGTCCTATTAACAATTTTGGACTCATCCAATGATCCAAGGACTCTAGCTGTTGCCTGCTTTGACATTTCACAGTTCATCCAGTGCCATCCGACTGGGCGGATCATTGTGACAGACCTTAAAGCCAAGGAACGAGTGATGAAACTAATGAATCATGAGAGTGCTGAGGTTACTAAAAATGCACTTCTCTGCATCCAAAGGCTTTTCTTGGGTGCAAAGTATGCAAGCTTCTTGCAGGTCTAG	1359	0.4231	MDQAELTTDQVLSRDIPWETYMSTKLISGTSLQLLRRYDHRSESQRAQLLDDDGPAYVRVFVHVLRDIFKEDTVEYVLALIDEMLTANPKRARLFHDNALADDDTYEPFLRLLRKGNWFVQEKSCKILALIVSVRPKNQNGNASNGGASNEKKSITSIDDVLIGLVKWLCEQLKKPSHPTRGVPTAINCLSTLLKEPVVRSSFVQADGVKLLVPLICPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVVVLTLKNLMSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGNLDWSPMHKDPIFWRENITNFEDHDFQILRVLLTILDSSNDPRTLAVACFDISQFIQCHPTGRIIVTDLKAKERVMKLMNHESAEVTKNALLCIQRLFLGAKYASFLQV	452

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g02966	452	PIRSF	V-ATP_synth_H	1	451	IPR004908	GO:0000221\|GO:0046961\|GO:1902600
	Vivi1g02966	452	Gene3D	-	344	444	IPR038497	-
	Vivi1g02966	452	Pfam	V-ATPase subunit H	329	441	IPR011987	GO:0000221\|GO:1902600
	Vivi1g02966	452	FunFam	V-type proton ATPase subunit H	343	444	-	-
	Vivi1g02966	452	Pfam	V-ATPase subunit H	4	323	IPR004908	GO:0000221\|GO:0046961\|GO:1902600
	Vivi1g02966	452	SUPERFAMILY	ARM repeat	8	442	IPR016024	-
	Vivi1g02966	452	Gene3D	-	4	331	IPR011989	-
	Vivi1g02966	452	CDD	VATPase_H	2	446	-	-
	Vivi1g02966	452	PANTHER	V-TYPE PROTON ATPASE SUBUNIT H	1	451	IPR004908	GO:0000221\|GO:0046961\|GO:1902600
	Vivi1g02966	452	SMART	arm_5	241	282	IPR000225	GO:0005515
	Vivi1g02966	452	SMART	arm_5	195	240	IPR000225	GO:0005515
	Vivi1g02966	452	SMART	arm_5	402	442	IPR000225	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g02966	Vivi-Chr1	64788788	64794757	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g02966	1	451	Primary Pumps ATPases(2)	AT3G42050	78.492	0.0	734

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g02966	K02144		-	gmx:100788723	813.913