Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02965 ATGGGTTGGCTAACCAAGTTGCTAAAGGGTTCGAATCATAAATATTCGGGACGAGGATATGATGGGAAATATGGACATGACAGAGATTCGAATAATCACGATGGTTCCGTGGATGATTTGACTGATTTTGAGAGAGAAGAAATTGATCGTGCAATTGCGCTCTCCCTTTCGGAGGAAGATCCTAAAGGGAAAAAAGTTGTGGAGGATGATTCTGAATCGGAAGATGATGAACTGTGTCCACTTGATGACGAAGAAGATGAACATGTTGATGATGTTAAGCAAGACGAAGATGACCATGATGGTGATGTTAAGCAAGAAGAAGACGACCATATAGCTAAAATTCAACAGGATGAAGACACGAGTCTTGACGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCTATTCAAGAAAGTTTGAGCATTGGTTCACCTCCCCGATCTCAATCTGATTCTATATTTCAACCTTTTACAAACCTCTTTCCGCCTGTATACAGAATCTGTGCTGGCTGCAATGCCGAGATTGGTCATGGAAGATTTTTGAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTTGCTGCCATGCTTGCAAACTGCCAATCACTGATTACGAGTATTCCATGTCTGGAAATCGCCCTTACCATAAATTGTGCTATAAGGAGCTGCATCACCCAAGGTGTGATGTTTGCAAGATCTTTATACCACAAAATTCTGCTGGACTCATTGAGTATAGAGCGCATCCTTTCTGGCTGCAAAAATATTGTCCTTCACACGAGCGTGATGGCACTCCTCGTTGTTGTAGCTGTCAGAGAATGGAGTCAACAGACACAAAATATCTGTTGCTCGATGATGGTCGAAAGCTCTGCCTTGAATGTCTTGATTCGGCTATTATGGATACTCACGAATGCCAACCTCTTTATCTTGAAATACAAGAGTTTTATGAAGGTTTGCATATGAAAATAGAGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCGCTGAACGAAGCCATGGAGGGGGAAAAGAATGGTCATCACCACTTACCTGAAACTCGAGGACTTTGCTTGTCAGAAGAGCAAACTGTCCCTACTATTTTAAGGAGACCGAGTATAGGAGCAGGCTACCGTGTCATAGATATGATAACCGAACCTTTTAGGCTGATACGTCGGTGCGAAGTGACAGCGATACTTGTATTGTATGGCCTTCCTAGGTTACTGACAGGATCAATCCTGGCTCATGAAATGATGCATGCATGGCTTAGACTTAAAGGCTATGGCAATCTTAGGCCAGAAGTTGAAGAAGGAATATGCCAAGTCTTAGCTCATATGTGGTTAGACTCAGAGATCTATTCCGGCTCCGGTAGTGAAGAAGCATCATCTTCATCTACGTCTTCGTCGTCTTCATCATCACCTTCCTCCACTTCATCAAAGAAGGGTAAACGGTCGGATTTTGAAAAGGAACTCGGTAAATTTTTTAAACACCAGATCGAGTCAGATAGCTCACCGGCCTATGGAGATGGATTCAGAGAGGGTAACCAGGCAGTGCTTAAGTACGGACTTAGAAGAACCCTTGACCATATCCGAATCACCGGAAGCTTTCCGTAA 1614 0.4331 MGWLTKLLKGSNHKYSGRGYDGKYGHDRDSNNHDGSVDDLTDFEREEIDRAIALSLSEEDPKGKKVVEDDSESEDDELCPLDDEEDEHVDDVKQDEDDHDGDVKQEEDDHIAKIQQDEDTSLDEVQLEEDEQLARAIQESLSIGSPPRSQSDSIFQPFTNLFPPVYRICAGCNAEIGHGRFLSCMGAVWHPECFCCHACKLPITDYEYSMSGNRPYHKLCYKELHHPRCDVCKIFIPQNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESTDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVPTILRRPSIGAGYRVIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSGSGSEEASSSSTSSSSSSSPSSTSSKKGKRSDFEKELGKFFKHQIESDSSPAYGDGFREGNQAVLKYGLRRTLDHIRITGSFP 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02965 537 SMART uim 43 62 IPR003903 -
Vivi1g02965 537 SMART uim 128 147 IPR003903 -
Vivi1g02965 537 Pfam LIM domain 169 223 IPR001781 -
Vivi1g02965 537 PANTHER PROTEIN DA1-RELATED 2 3 537 IPR045218 -
Vivi1g02965 537 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 164 194 - -
Vivi1g02965 537 CDD LIM_DA1 169 221 - -
Vivi1g02965 537 MobiDBLite consensus disorder prediction 1 108 - -
Vivi1g02965 537 Pfam Protein DA1 318 532 IPR022087 -
Vivi1g02965 537 SMART lim_4 168 220 IPR001781 -
Vivi1g02965 537 MobiDBLite consensus disorder prediction 94 108 - -
Vivi1g02965 537 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 128 147 IPR003903 -
Vivi1g02965 537 MobiDBLite consensus disorder prediction 70 93 - -
Vivi1g02965 537 FunFam Protein DA1-related 1 163 222 - -
Vivi1g02965 537 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 251 - -
Vivi1g02965 537 MobiDBLite consensus disorder prediction 458 480 - -
Vivi1g02965 537 MobiDBLite consensus disorder prediction 458 485 - -
Vivi1g02965 537 ProSitePatterns LIM zinc-binding domain signature. 169 203 IPR001781 -
Vivi1g02965 537 ProSiteProfiles LIM domain profile. 167 227 IPR001781 -
Vivi1g02965 537 Gene3D Cysteine Rich Protein 166 228 - -
Vivi1g02965 537 MobiDBLite consensus disorder prediction 19 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02965 Vivi-Chr1 64747932 64751466 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi1g02965 DA1-like 2.8e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02965 - - gmx:100806605 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02965 1 64747932 64751466 Vivi1g02965 1 64747932 64751466 ECH
Vivi1g02965 1 64747932 64751466 Vivi2g03154 2 132137700 132141696 ECH
Vivi2g03154 2 132137700 132141696 Vivi1g02965 1 64747932 64751466 PCT