Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02962 ATGGGGATAGCAACAACTTCATCACTTTCTTCACCTTTCTCAAATTCATCAAACACACAAAATTTCAATTCAATCTTAGAAAAGTCTCAAATCTCAACCAATTCTATGTCACAAGATTATCAGCACCAGCACCAGCACCACCAGAGCCACCACCAGCAAGGAATCTTTGGTTTCTCGAACGGATTCGAGAGATCAAACACTCCGGTGGAAGACAACAGTCCACACAACCACCAAAACCAACAAATTCAAAGAGACAAATTGAGACTTCAAGGCTTCGACTCACAACAACAACAACCACCGCCGTCGCTAATAGACACCATAGAAGAAGAACAAGAAGCTCTCCCGGTTTACGAAACAACCGGAATGTTGTCGGAAATGTTCAATTTCCCTCACGGCGCATCTTCTGCAGCTGAATTATTAGAGCAGCAACAACAAATGGCGTCAACTGCGTCTTTCCGTTCGTCGTCAAGAACACCACCACCACAACCACATGGAATAGGCAATTCCAGTGACTGGTACGGAAACAGACAAACGATTTTAACAGATTCGAAAAACCATCTTCAAAATAACCGTGACAGTAGCAGCAGCAGTAGCCTATTTCATCATCATCAGAATCATCAGATGTCAAACATAAATGCTGAGTCAGCAGCAGCCATGCAACTTTTTCTGATGAATCCTCAAACTACCAGATCTCCATCTCCTCCTCCACCTCAACCTCATCATCCTTCATCTACAAATTCATCCACTCTTCACATGCTTCTTCCCAATCCTTCAACTACTAATCTCCAAGGCTTTAATTCCGGAGCCGGAGGGTCTTTCGGTCAATTCACATGGGGACATGGAAGTACTCAAGAAGGAGGAGCAACAACAAGTCATCACCAACTCAACAACAACCAACCTGAGATTGGAAGTGTTGTTGAAGGACAAGGTCTTTCATTGTCTTTATCTTCATCCTTACAACACCACCACTCCAACGAATTACGAATGGGTGATGCAGCCGGATTTCTATATTACAATCAAGGAGGACCAGGACCGGGACCGGGACCGGGACCAGGACCTTCTTACAAGAATCTTCATCATCACCATTTACAAGGAGCCGGATTAGGACAAATTAGCCATATTCATCAAGGACATGTCGGATATGGTTCATCTTCTTCTTCGTCTTTAGGTGTTGTTAATGTTTTAAGAAATTCAAAGTATGTTAAAGCAGCTCAAGAATTACTTGAAGAATTTTGTAGTGTTGGAAGGGGCCAATTCAAGAAGAATAAATTTAATAGACAATTATCAAACCCTAATTCAAATCAAGGTGGTGGTAGTCTTGGTGGTGCTGCTTCTTCATCATCATCAAAAGATGTTTCACCTTTGTCACCTGCTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTAACCATGCTTGACGAGGTGGATAGAAGATACAATCACTACTGCGAACAAATGCAAATGGTGGTGAACTCGTTTGATTTAGTGATGGGATTTGGTGCTGCAGTTCCATACACAGCGCTAGCGCAGAAAGCGATGTCGCGGCATTTTAGGTGTTTGAAGGATGCAATAGCAGCACAGTTGAAACATAGTTGTGAGTTATTGGGAGAGAAAGATGGTGTGGGGTCATCTGGATTGACGAAAGGTGAGACACCGAGGCTTAAGCTGCTTGAACAAAGCTTGAGACAGCAAAGGGCGTTTCATCAGATGGGGATGATGGAACAGGAAGCTTGGAGACCACAGAGAGGATTGCCTGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTTGAACATTTTCTTCATCCGTACCCAAGTGATGCAGATAAGCATCTCTTAGCAAGACAGACTGGCCTTTCCAGAAATCAGGTATCAAACTGGTTCATAAATGCCAGGGTTCGATTGTGGAAACCCATGGTAGAAGATATGTACCAACAAGAACTTAAAGAAGCAGAAGGATCTTCAGAAGGTGAAGAAGATAGAGAGAACAAGAATCAAAGCAGTACTAGCAACACCAACAACAACAACACTAGTGGTCACATAGCTACTACAACAACAACAATTGCACAAACTCCAACACCTTCAACAACAACAGCATCTCCAACAACAACAACACCACAACCTACAAGCAACAGCAACAATAATAAGAGATCCAATATTATGAATGCCAATACTGAAAACGACCCATCACTTACACCAATAATAAATAGACAAGGCTTCTCGGAAAACCAAGCAATATTGTTACAACAACAATCAACCACCAAAACCACCGTCTCTCAAGTTGCACCACCTATCTCCGATTCTATGGCCATCGATGACACGTGTCGACATGGCAGCTTTGTTACAGCGGAATATGGGACCACACCTGCTTCTTCTTCGGACAATATTATCAGATTTGGGACCACTGTCTCTGGTGATGTGTCACTCACTTTAGGGCTACGTCACGCCGGAAATTTGCCCGACAAAACTACTTTCTCTCTTTCAGACTTTGGAGGCATTTAA 2508 0.4298 MGIATTSSLSSPFSNSSNTQNFNSILEKSQISTNSMSQDYQHQHQHHQSHHQQGIFGFSNGFERSNTPVEDNSPHNHQNQQIQRDKLRLQGFDSQQQQPPPSLIDTIEEEQEALPVYETTGMLSEMFNFPHGASSAAELLEQQQQMASTASFRSSSRTPPPQPHGIGNSSDWYGNRQTILTDSKNHLQNNRDSSSSSSLFHHHQNHQMSNINAESAAAMQLFLMNPQTTRSPSPPPPQPHHPSSTNSSTLHMLLPNPSTTNLQGFNSGAGGSFGQFTWGHGSTQEGGATTSHHQLNNNQPEIGSVVEGQGLSLSLSSSLQHHHSNELRMGDAAGFLYYNQGGPGPGPGPGPGPSYKNLHHHHLQGAGLGQISHIHQGHVGYGSSSSSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNKFNRQLSNPNSNQGGGSLGGAASSSSSKDVSPLSPADRIEHQRRKVKLLTMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIAAQLKHSCELLGEKDGVGSSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGSSEGEEDRENKNQSSTSNTNNNNTSGHIATTTTTIAQTPTPSTTTASPTTTTPQPTSNSNNNKRSNIMNANTENDPSLTPIINRQGFSENQAILLQQQSTTKTTVSQVAPPISDSMAIDDTCRHGSFVTAEYGTTPASSSDNIIRFGTTVSGDVSLTLGLRHAGNLPDKTTFSLSDFGGI 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02962 835 MobiDBLite consensus disorder prediction 226 252 - -
Vivi1g02962 835 SMART prehox3 389 528 IPR006563 -
Vivi1g02962 835 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1g02962 835 CDD homeodomain 580 641 IPR001356 GO:0003677
Vivi1g02962 835 MobiDBLite consensus disorder prediction 650 732 - -
Vivi1g02962 835 Pfam Homeobox KN domain 597 636 IPR008422 GO:0003677|GO:0006355
Vivi1g02962 835 MobiDBLite consensus disorder prediction 141 204 - -
Vivi1g02962 835 FunFam BEL1-like homeodomain protein 4 583 645 - -
Vivi1g02962 835 SMART HOX_1 580 644 IPR001356 GO:0003677
Vivi1g02962 835 MobiDBLite consensus disorder prediction 668 732 - -
Vivi1g02962 835 MobiDBLite consensus disorder prediction 341 360 - -
Vivi1g02962 835 Pfam Associated with HOX 394 527 IPR006563 -
Vivi1g02962 835 Gene3D - 583 645 - -
Vivi1g02962 835 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 243 670 - -
Vivi1g02962 835 ProSiteProfiles 'Homeobox' domain profile. 577 640 IPR001356 GO:0003677
Vivi1g02962 835 MobiDBLite consensus disorder prediction 50 83 - -
Vivi1g02962 835 SUPERFAMILY Homeodomain-like 582 647 IPR009057 -
Vivi1g02962 835 MobiDBLite consensus disorder prediction 424 454 - -
Vivi1g02962 835 MobiDBLite consensus disorder prediction 32 83 - -
Vivi1g02962 835 MobiDBLite consensus disorder prediction 424 459 - -
Vivi1g02962 835 MobiDBLite consensus disorder prediction 650 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02962 Vivi-Chr1 64647902 64655082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02962 389 835 Homeobox Transcription Factor Family AT2G23760 53.984 2.02e-153 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vivi1g02962 POX 3.3e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02962 - - mtr:11411247 1151.35