Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02919 ATGACTAACCCTTGTGCGGCGTGCAAGCATATCCGTCGAGCTTGCGACCCGAATTGCGAGTTAGCTCCCTACTTCCCGGCGGACAAACCACATCGTTTCAGCGTGGTGCATACAGTATTCGGAAAAAGCAATGTGTCGAAGCTGTTGCAACGGCTGGACGTTACGCAACGTGAACAAGCTGTTGATTCATTGGTGTATGAAGCTGAGGCGCGTATGAGAGATCCTGTTTATGGCTGCGTGAGTTTTATGTGGAATCTTCAACAGAGGTTGAACGAAATTCAAGAGAGACTCAGGAATGTGAAGAACGAATTGGCTAAATACTTTGATCATGATACTGTCGAATTTGTTATCAAGAATCCTCATTATTTTGGATTCGAGCCTCGTGAGTCTCAGCAGCTGCCAGATGTGACCGCTGCTGAGCAACATCGAAACTTGGAACAATTGAGACAAATGCTTCTTAGATCTGATAGAGGGTTCTCTACTGGTGATGGTGGGTTGGGACATCATCACATGAATGTTCATGATGATTATGTTGGTCCTTCTTCTGGTACTTTTGAAATGGGTGGCACTAGCACCAGCGGTTATCAGATTCAGCCACCACCACATCAGTAA 612 0.4592 MTNPCAACKHIRRACDPNCELAPYFPADKPHRFSVVHTVFGKSNVSKLLQRLDVTQREQAVDSLVYEAEARMRDPVYGCVSFMWNLQQRLNEIQERLRNVKNELAKYFDHDTVEFVIKNPHYFGFEPRESQQLPDVTAAEQHRNLEQLRQMLLRSDRGFSTGDGGLGHHHMNVHDDYVGPSSGTFEMGGTSTSGYQIQPPPHQ 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02919 203 ProSiteProfiles LOB domain profile. 3 104 IPR004883 -
Vivi1g02919 203 MobiDBLite consensus disorder prediction 181 203 - -
Vivi1g02919 203 MobiDBLite consensus disorder prediction 184 203 - -
Vivi1g02919 203 Coils Coil 83 110 - -
Vivi1g02919 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 133 - -
Vivi1g02919 203 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02919 Vivi-Chr1 63724719 63726018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02919 2 145 AS2 family AT5G66870 48.649 4.50e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi1g02919 LOB 4.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02919 - - vvo:131607884 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02919 1 63724719 63726018 Vivi1g02919 1 63724719 63726018 ECH