Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02904 ATGGCTATGGTTCTAGATGCAGTGATTGGAAAAGTAGTGGATGAACTATTGAGTTCAGTTGTTGAAATGAAGAACAAAGCTTTGAAGTTCAAATCATCTCTAGAAAGATTAGAAAAGACTCTCCAGTCATTAGCACCATTGATCAATCAAATAGATGAACTCAACAAGAAACTGGATCGACCGGCTAAAGAAACCGAGAGACTAATCAAGCAGATGAAAGACGGGAAAGAACTAGTCCTTAAATGTTCTGATCAGGACAAATTCCAGTGGTGGAATTGTTGTTACAAGAAGGCGGAGTATCAAGAACAGCTTGAAGAGTTGGATGGTGAGATTAAAAGATTCTTTGAGCTTGATTTGAGAGCTCAAGATGCGAGGAACGGGTTGGAAGCGCTTTTGGAGATTAAAGAGTTTCGAGCTGAGTTTAGAAGTGTTGGTTTGAGGAATGAGAGGATTGAATTGAGAGGTGTTTGTTTTCCACCTCAACCGCCGGGTTTTATTGTTGGGTTGGATGGTCCTTTGAATGAGTTGAAGATGAGGTTGTTGAAGGATGAGGTTAGTGTTTCTGTTGTTACGGTTACTGGTTCTGGTGGTTCGGGGAAATCTACTTTGGCGAAAAGGTTTTGTTGGGATGAACAAGTAAAAGGTAAATTCAAGGAAAATATCTTCTTCATTACATTTGCAAAAACACCAAAGCTGAATGCTATGGTGCAGAAACTGTTTCAACACACTGGCTACAAAGCTCTCGATTTTCAAAGCGATGAAGACATGTTTAACCAGTTGGAACAATTGATGAAACAAATCGGGAGAAATGGCCCGATATTGTTGGTCTTAGATGATGTTTGGCTAGGATCGGAGTCACTTGTTGACAACTTTGTGTTTGAGATTCCTAACTACAAGATTTTGGTGACATCAAGATTTGCAATTGGAAGATTCGGACATCCATTCGTTTTGAGACCTCTTTCGGAGGCAAATGCTATAAACCTGTTTAAGCATTCAGCTTCCTTAACTAAGAGCAACTCAGATATTCCAGATGATGTTGTGAAAGAGATAGTAAGAGGTTGTAGCGGTTCTCCCTTAGCGCTTCGAGTGAGTGGAAGATCGTTGAGTAACGAACAACAGATAGTTTGGCTTAACAGGGCTAAGGAATTATCAGCAGGTGGTACAATTCTCGATTCCAATACAGATGTACTTTCTTGTCTCCAAAAGAGCTTAGATGTATTGGATCCCAAGTCCATGGAGTGTTTTCGGGACTTAGGCTTATTTCCTGAAGATCAAAGGATCCCTGTCGCTGCCCTCATTGATATGTGGGCAGAAATAAGGAATGAAGACGACGCAACTGCAATGGAAAGAATCTATAAACTGGTTAATCTCAACTTAGCTGATATTATTGTCACAAGGAAAGTTGTGAGCGGCACAATTGACTACAATTACCATTATGTTACGCAACATGGTCTTCTTCGTGACCTAGCCATCCGTAATAACAGCCAAGAGCCTGAGGATAAAAGGAATAGGCTCATAATTGACACGAGCGCAAATAATCTTCCCTCATGGTGGACTTCAGAGACTGAATATCACATTGCAGCTCGCGTTTTATCTATATCAACTGATGAGACATTCCCTTCAAAATGGTGCAACTTGCAACCAACTGAAGTCGAGGCTTTAGTGTTAAACCTTAGAGAAAAGAATTGCATACTTCCAATGTTCATGAAGAAAATGACCAAACTAAAAGTTTTAATAATAACAAACTATGACTTCTATCATGCTGAATTAGAGAATTTCGAGCTTCTCGATCATCTATCAAGTCTTAGACGAATCAGATTAGAGAAAGTCACGATTCCTTTCCTCGGGAAAACAATAGTACAACTGAAGAATCTTCAGAAGTGTTCTTTCTTTATGTGCAATGTGAATGAAGCATTTAAAACTTGCACTATCCAAGATTCAGAAATTTTTCCGAATTTGTTGGAGATGAATTTCGATTACTGTGACATGGTGGAACTACCAAATGTGATTTCTTACATTGTATCCCTAAAGAAGCTTAGTATTACAAATTGTCATAAGCTTAGATCACTTCATGAAGGAATTGGAAAATTGGTTAATTTGGAATCACTAAGGTTAAGTTCATGCAGTGAATTACAAAAGTTGCCAGATTCAATCACAAATATGCATAGGCTAAAGTTTCTTGACATCTCAGGATGCATAAACCTTAGTCAGTTGCCTGAGAATATAGGTGAGTTGGAGAAACTAGAAAAGGTGAATATGAGAGGTTGCTCTAGCATTAGTGAATTGCCATCATCGGTTATGGATCTTGAGGGACTAATGCATGTGGTGTGTGATGAAGAAACTGCTGAAAAATGGGAACCTTTTAGGACCATTCTTGGTGATCTAAGGATAGAGGTTGTTCAAGAAGATTTCAATTTAGATTTTCTTGATAATCAGTAG 2439 0.3879 MAMVLDAVIGKVVDELLSSVVEMKNKALKFKSSLERLEKTLQSLAPLINQIDELNKKLDRPAKETERLIKQMKDGKELVLKCSDQDKFQWWNCCYKKAEYQEQLEELDGEIKRFFELDLRAQDARNGLEALLEIKEFRAEFRSVGLRNERIELRGVCFPPQPPGFIVGLDGPLNELKMRLLKDEVSVSVVTVTGSGGSGKSTLAKRFCWDEQVKGKFKENIFFITFAKTPKLNAMVQKLFQHTGYKALDFQSDEDMFNQLEQLMKQIGRNGPILLVLDDVWLGSESLVDNFVFEIPNYKILVTSRFAIGRFGHPFVLRPLSEANAINLFKHSASLTKSNSDIPDDVVKEIVRGCSGSPLALRVSGRSLSNEQQIVWLNRAKELSAGGTILDSNTDVLSCLQKSLDVLDPKSMECFRDLGLFPEDQRIPVAALIDMWAEIRNEDDATAMERIYKLVNLNLADIIVTRKVVSGTIDYNYHYVTQHGLLRDLAIRNNSQEPEDKRNRLIIDTSANNLPSWWTSETEYHIAARVLSISTDETFPSKWCNLQPTEVEALVLNLREKNCILPMFMKKMTKLKVLIITNYDFYHAELENFELLDHLSSLRRIRLEKVTIPFLGKTIVQLKNLQKCSFFMCNVNEAFKTCTIQDSEIFPNLLEMNFDYCDMVELPNVISYIVSLKKLSITNCHKLRSLHEGIGKLVNLESLRLSSCSELQKLPDSITNMHRLKFLDISGCINLSQLPENIGELEKLEKVNMRGCSSISELPSSVMDLEGLMHVVCDEETAEKWEPFRTILGDLRIEVVQEDFNLDFLDNQ 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02904 812 Coils Coil 97 117 - -
Vivi1g02904 812 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 2 809 IPR039203 GO:0050832
Vivi1g02904 812 Gene3D - 319 403 IPR042197 -
Vivi1g02904 812 ProSiteProfiles RPW8 domain profile. 1 153 IPR008808 -
Vivi1g02904 812 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 7 140 IPR008808 -
Vivi1g02904 812 Coils Coil 20 40 - -
Vivi1g02904 812 Gene3D - 404 493 IPR036388 -
Vivi1g02904 812 PRINTS Disease resistance protein signature 719 735 - -
Vivi1g02904 812 PRINTS Disease resistance protein signature 354 368 - -
Vivi1g02904 812 PRINTS Disease resistance protein signature 189 204 - -
Vivi1g02904 812 PRINTS Disease resistance protein signature 267 281 - -
Vivi1g02904 812 Gene3D - 152 309 IPR027417 -
Vivi1g02904 812 Pfam Leucine Rich Repeat 699 720 IPR001611 GO:0005515
Vivi1g02904 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 418 IPR027417 -
Vivi1g02904 812 Pfam NB-ARC domain 172 374 IPR002182 GO:0043531
Vivi1g02904 812 SUPERFAMILY RNI-like 562 774 - -
Vivi1g02904 812 Gene3D Ribonuclease Inhibitor 501 792 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02904 Vivi-Chr1 63419626 63423487 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02904 167 767 WRKY Transcription Factor Family AT5G45050 22.488 6.14e-13 70.9