Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02900 ATGAGTAGCGCCACACAAATTCTTGCCCTTACTACAAGATTTCATGATATCTTAAATAAGATATCACAAATTGTTGAAAAAGCTAGAAACAACAAACGTACAAGGAGATTATTGAGATCCACTTTAAAGGATTTAACATCTCTTGTTAAAGACATTAACCAATACAATCAACACTTGAATCAACCTAGTCAAGAAATTAACTCTCTTATACAAGAAAATGCTGCATGCAAATGTTCTTCTGACAATAGCTTGTGGAACAAGTGTCTCTCGTGGTTTCGGAATGGTTCTTATGTTGTTGATGATTCAGAATCTCTTACTGTGAAGGATGTTAGAGAGACACTTTATAAGGTCAGAGAAATTCTTGAGCTTATCAACAATCAAAATTTTGAACAGAAACTTAATGAAAATGGAGGAGCACCATTTAAGAGTCCTTTTGGTGTTCCTGAAAATCCAGAATTCACTGTTGGGTTGGATATACCATTTACCAAGCTGAAAATGGAGCTTCTTAAGGATGGTAGTTCCACCCTTGTGTTGACTGGTTTCGGAGGATTGGGAAAAACTACTTTGGCTACAAAGCTTTGTTGGGATGAACATGCTAAGGCTAAATTTAAGGAGAATATAATATTTCTCACCTTCTCAAAAACACCGATGTTGAAGATTATTATTGAGAAACTATTTGAACATTGTGGATATCCAGTGCCTGAGTTTCAAACTGATGAAGATGCTGTCAATAGATTGGAACTTTTGCTGAAGAAAGTTGAGGGAAGTCCACTTTTGTTGGTTCTGGATGATGTTTGGCCAAACTCAGAAACCCTTATTGAGAAACTTCAATTCCAGATATCTGATTTCAAAATTCTGGTCACTTCAAGGGTTGCATTTCCAAGATTTAGCACAACATGTGTCTTAAAACCTCTTGTCCATGATGATGCAGTAATACTCTTCCATCACTATGCTCAGATGGAAAAAAATAATTCAAATATTATCTACAAAGATCTCGTCGAAAAGGTTGTGAAAAATTGCAAAGGTTTACCGCTTGCCATCAAAGTTACTGCAACATCACTCAGAAATCAGCCTTATGACTTTTGGCGAAAGATAGTGAAGGAACTATCACAAGGTCATTCTATACTTGATTCTAACACCGAATTATGTTCTCTCCTCCAAAAGATATTAGATGTTTTGGAAGATAATCCCATACTCAAAGAGTGTTTCAAGGACCTAGCCTTATTTCCTGAAGATCATAGAATACCTGTTGTTGCTCTCATTTATATGTGGACAGAGTTGTATGAACTAGATGACAACGGAATAGAAGCAATGGAAATCATCAACAAATTAAGCTCCATGAATCTGGCTCATGTCTCAATAACAAGGAAAAATGCTAGTGACGCAGACGAATACAACTACAATAACCACTTTATTTCCCTTCATGATCTTGTAAGAGATCTTGGAATTTACGAAAGCACCAAAGAACCAATTGAGCAGAGAAAAAGAATGATCTTTGACATGAATGAAAATAAACGTGAATGGTGCATCGGGGAGAAGCAGCAAGGCCTGATGATCCGTATATTGTCAAAATTTCTTACTTTGTGCGTGAAACATAATCACCAGCAGCTCAATGCCCGTATATTGTCTGTATCAACTGATGACAGTTATGCTTTAAATTGGTCCCAAATTCAAACAGCTCAAACTGAGGTTCTTATTTTAAATCTCCATACCAAACAGTACTTATTTCCCGAGTCAATGGAGAAAATGAGTAAACTGAAAGTTCTGATAATCACAAACTATGGTTTCCATCCTTCTGAACTGAACAACTTTGAGATACTTGACTCTTTACAAAACTTGACAAGAATCAGACTAGAACGAATTTTCGTTCCTTCCTTTGGAACGTTGAAAAATCTGAAAAAACTATCGCTCTACATGTGTAATACGAGTCTCGCCTTTGAAAAGGATAACATTCTGATTTCAAATGCATTTCCTAATCTAGAAGAGTTGAATATTGATTACTGCAAAGATTTGGTTGAATTGCCTAATGCAGTCTGTGATATCACCCCATTAAAGAAACTCAGTGTTACTAATTGCCACAAACTTTCTGCACTTCCTCAAGATATTGGAAAATTGGAGAGTTTAGAACTTCTAAGGCTGAGTTCCTGCACTGATTTGGAAGTGATGCCGAATTCCATTAGAAAGCTTTTAAATCTAAGACATCTTGACATATCCAACTGCATAAGCCTTTCAAGTTTACCTGAGGAATTTGGTAATCTGTGCAATCTAAGGAATCTGTACATGGCAAGTTGTGCAAGTTGTGAATTGCCGTTCTCAGTCGTCAATCTTTTGAATTTGAAGGTGATAACGTGCGATGAAGAGACGGCTGCTTCATGGGAAGCTTTCCAACCTATGCTTCCCAATATGAAGATAGAGGTTCCTCATGTTGATGTAAACTTGAACTGGCTTCATTAA 2454 0.3659 MSSATQILALTTRFHDILNKISQIVEKARNNKRTRRLLRSTLKDLTSLVKDINQYNQHLNQPSQEINSLIQENAACKCSSDNSLWNKCLSWFRNGSYVVDDSESLTVKDVRETLYKVREILELINNQNFEQKLNENGGAPFKSPFGVPENPEFTVGLDIPFTKLKMELLKDGSSTLVLTGFGGLGKTTLATKLCWDEHAKAKFKENIIFLTFSKTPMLKIIIEKLFEHCGYPVPEFQTDEDAVNRLELLLKKVEGSPLLLVLDDVWPNSETLIEKLQFQISDFKILVTSRVAFPRFSTTCVLKPLVHDDAVILFHHYAQMEKNNSNIIYKDLVEKVVKNCKGLPLAIKVTATSLRNQPYDFWRKIVKELSQGHSILDSNTELCSLLQKILDVLEDNPILKECFKDLALFPEDHRIPVVALIYMWTELYELDDNGIEAMEIINKLSSMNLAHVSITRKNASDADEYNYNNHFISLHDLVRDLGIYESTKEPIEQRKRMIFDMNENKREWCIGEKQQGLMIRILSKFLTLCVKHNHQQLNARILSVSTDDSYALNWSQIQTAQTEVLILNLHTKQYLFPESMEKMSKLKVLIITNYGFHPSELNNFEILDSLQNLTRIRLERIFVPSFGTLKNLKKLSLYMCNTSLAFEKDNILISNAFPNLEELNIDYCKDLVELPNAVCDITPLKKLSVTNCHKLSALPQDIGKLESLELLRLSSCTDLEVMPNSIRKLLNLRHLDISNCISLSSLPEEFGNLCNLRNLYMASCASCELPFSVVNLLNLKVITCDEETAASWEAFQPMLPNMKIEVPHVDVNLNWLH 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02900 817 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 8 816 IPR039203 GO:0050832
Vivi1g02900 817 SUPERFAMILY RNI-like 572 784 - -
Vivi1g02900 817 Pfam NB-ARC domain 163 373 IPR002182 GO:0043531
Vivi1g02900 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 406 IPR027417 -
Vivi1g02900 817 Gene3D Ribonuclease Inhibitor 529 801 IPR032675 -
Vivi1g02900 817 Gene3D - 386 483 IPR036388 -
Vivi1g02900 817 Gene3D - 305 384 IPR042197 -
Vivi1g02900 817 Gene3D - 141 293 IPR027417 -
Vivi1g02900 817 PRINTS Disease resistance protein signature 175 190 - -
Vivi1g02900 817 PRINTS Disease resistance protein signature 703 719 - -
Vivi1g02900 817 PRINTS Disease resistance protein signature 252 266 - -
Vivi1g02900 817 PRINTS Disease resistance protein signature 340 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02900 Vivi-Chr1 63352570 63355638 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02900 609 779 WRKY Transcription Factor Family AT4G12020 28.205 1.27e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02900 - - gmx:112997603 974.541