Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02893 ATGTCCAAAATGGTGGCGGTTGATGAAAAGAAGAAGGGTCACATTGTTCCACAATATGATGATCAAGGTGTAACTTTGGCGTTTCATGGCAGAGAGGTCTATGAGGGTGTTCCTATTGCACATTTGCCTAAAAAGTCTCCTTTAAACGATAAACATAAGGTGGTTGAAAATAAACACAGACAAGCAACACCTGATGAGCCACAATCACACAAGTTTGCAAGCTCATCTAAAGAGACAACAGATGCAACATTTTCTCGTGGCGAGGCTGTGATTCAAGCCGAAGGACTCCGATCAAGTTTGGAACCGGAATTCCCAAGTTTTGTGAAGTCCTTGGTCAGATCACATGTAGCCAGTTGTTTTTGGATGGGACTACCCGTGGCATTCTGTAAAAGACATTTACCAGATAAGGATACAACTATCACATTGGAAGATGAATTTGGTAGAGAATACAAGACAAAATACATTGCATGTAAAACAGGATTGAGTGCTGGTTGGAGACAGTTTTCTGCTGTGCATAAATTGCTAGAGGGTGATGTGGTGGTATTTCAATTAGTTGAACCCGCCAAATTTAAGGTTTATATAATAAGAGCTATGAGAGAACCAGAGAATCAAGAAAGTTGCTCAAAACAAAAAGTTGGAGGAAAAAATTACACAGAAGCTGATGTTGTAGCATGTAATAGTCCAAAAAGAAAAACTGGTAAGCCTATCCCACAAGACATCCAAAAGAAAAAGAAAATTATTGTATCGAAAACGGAGACTAAGGCTAAACAGTATACAGAACATTATGAAAATGATAGTGAGGAAGCTTTGTCGGAAATATTGGAGGCATATAAAATGCCTGAATTCAAAGACTTAAATGGTTTCGAAAATTTCAGAATCATAGTCAACGGAATGCTAATTGACAATGAACTCTCTACGGAAGTTCGAAACAAGTACTACAAACTCTGCTACAGTCAACAAGCTTTTCTTCATGACAATCTCATCAAAGGCTTGAACTATAATTTGATTTCTGGAGTTATATATGAAATTGTTAACATTGCTGATGCAATAAAAGTCAGTGTGATATCTACGCCGCGTTTGGAGTTTTCTAATTGGGATAAAACGTTGCAGGCATTTGAAAATTTGGGCATGAATGTTGAATTTTTGAGACATCGATTGCGCAGGCTTGTTAGCCTTGCTTATGAAACGGACAACGGCTTAGAGACTAGAAGATACTTGGCGTATAGAACCGAGGAACACAGTGGAGTAGATGATGGAATAAAGAACATGGAAACAAAACTTGAGGAATTGAAAGAAGCTTGTAATGGATTTGGTGATTATCTTGAGAGTTTGAAGCACAAAGCTGAAAGGTATGAACATAAGTTTCAAAAAGAAGTTGCTGCTAATTGGTGA 1392 0.3793 MSKMVAVDEKKKGHIVPQYDDQGVTLAFHGREVYEGVPIAHLPKKSPLNDKHKVVENKHRQATPDEPQSHKFASSSKETTDATFSRGEAVIQAEGLRSSLEPEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDTTITLEDEFGREYKTKYIACKTGLSAGWRQFSAVHKLLEGDVVVFQLVEPAKFKVYIIRAMREPENQESCSKQKVGGKNYTEADVVACNSPKRKTGKPIPQDIQKKKKIIVSKTETKAKQYTEHYENDSEEALSEILEAYKMPEFKDLNGFENFRIIVNGMLIDNELSTEVRNKYYKLCYSQQAFLHDNLIKGLNYNLISGVIYEIVNIADAIKVSVISTPRLEFSNWDKTLQAFENLGMNVEFLRHRLRRLVSLAYETDNGLETRRYLAYRTEEHSGVDDGIKNMETKLEELKEACNGFGDYLESLKHKAERYEHKFQKEVAANW 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02893 463 Coils Coil 441 461 - -
Vivi1g02893 463 CDD B3_DNA 105 196 IPR003340 GO:0003677
Vivi1g02893 463 SMART B3_2 107 198 IPR003340 GO:0003677
Vivi1g02893 463 Gene3D - 88 199 IPR015300 -
Vivi1g02893 463 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 43 200 IPR044837 -
Vivi1g02893 463 SUPERFAMILY DNA-binding pseudobarrel domain 100 196 IPR015300 -
Vivi1g02893 463 MobiDBLite consensus disorder prediction 67 84 - -
Vivi1g02893 463 MobiDBLite consensus disorder prediction 57 84 - -
Vivi1g02893 463 ProSiteProfiles B3 DNA-binding domain profile. 107 198 IPR003340 GO:0003677
Vivi1g02893 463 Pfam B3 DNA binding domain 107 197 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02893 Vivi-Chr1 62963831 62966549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02893 85 203 B3 DNA Binding Superfamily AT3G19184 48.739 4.18e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi1g02893 B3 3.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02893 - - mtr:120577567 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02893 1 62963831 62966549 Vivi1g02893 1 62963831 62966549 ECH