Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02888 ATGGCTGATTTTCCCATTTCAGGTGATAATAATGTTGGAGCAGCATTATTACCAGATAAGGAACAAGAAAACTCTATCATAGTATCCACTCTCGTTCATGTTCTCTCCTCGTCAAATAACGTTGCTGTTCCTAACCAACAAATGAAACGGGAATCAGAATCAGCCACGTCATCGTCTGCAAGTGGGTCCCTCCAGAATCAGTATGATCCTTACACGTGTAGTGCATGTAAAATCAACGGCTGTCTCGGTTGCAAGCTCTTCGTTGAGAAAGAGAAAGGAGAGAAGAGAAAAAAGTACAGGGGAGTGAGGCAGAGAGCATGGGGAAAATGGGTGGCTGAGATACGAGATCCAAAAAGGGCCACTCGTGTTTGGCTTGGTACTTTTCCTACAGCGGAGAATGCTGCAAGAGCTTATGATCAAGCTGCTATAAAGTTTCGTGGTGCTAGAGCTAAACTCAATTTTGAATCCTCAGATTGTAGTGTTACTGATGAAAAGATGCAAAGTGCGAAAGTGAAGGAACATGCTGGTGAGATTGCAGAGATGAATCAAACAAAAACTACTATCTTAACATTCGGGTCAACAAGCCAAGTTGACTAG 597 0.4288 MADFPISGDNNVGAALLPDKEQENSIIVSTLVHVLSSSNNVAVPNQQMKRESESATSSSASGSLQNQYDPYTCSACKINGCLGCKLFVEKEKGEKRKKYRGVRQRAWGKWVAEIRDPKRATRVWLGTFPTAENAARAYDQAAIKFRGARAKLNFESSDCSVTDEKMQSAKVKEHAGEIAEMNQTKTTILTFGSTSQVD 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02888 198 Gene3D AP2/ERF domain 97 156 IPR036955 GO:0003700|GO:0006355
Vivi1g02888 198 FunFam Ethylene-responsive transcription factor 2 97 156 - -
Vivi1g02888 198 Pfam AP2 domain 98 147 IPR001471 GO:0003700|GO:0006355
Vivi1g02888 198 ProSiteProfiles AP2/ERF domain profile. 98 155 IPR001471 GO:0003700|GO:0006355
Vivi1g02888 198 SMART rav1_2 98 161 IPR001471 GO:0003700|GO:0006355
Vivi1g02888 198 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Vivi1g02888 198 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Vivi1g02888 198 SUPERFAMILY DNA-binding domain 98 155 IPR016177 GO:0003677
Vivi1g02888 198 PANTHER DNA-BINDING DOMAIN 57 167 IPR044808 GO:0003700|GO:0009873
Vivi1g02888 198 MobiDBLite consensus disorder prediction 44 64 - -
Vivi1g02888 198 CDD AP2 99 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02888 Vivi-Chr1 62837812 62838736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02888 21 158 AP2-EREBP Transcription Factor Family AT4G34410 46.023 4.35e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi1g02888 AP2 3.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02888 - - psat:127136619 269.24