Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02887 ATGTCACAGCAGCGAGTTTCTTCGTCAGCGGCGCCATTTTTGTCGAAGACTTATGAGATGGTGGATGATTCTGTGACTGATGATGTGATTTGCTGGGGTGAAAATGGCAAGAGTTTTGTTGTGGTGCAACATGCTGAGTTTTCCAGGGATTTGCTTCCTAAGTACTTCAAGCACAACAATTTCTCAAGTTTTGTACGTCAACTCAACACTTATGGATTCCGCAAAATTGTTTCTGACAAATGGGAATTTGCCAACGAAAATTTCAAGCGAGGACAGACAGAGCTACTATCATCAATCAAGCGCCGAAAGACTCAATCATATGTAGCCATAAGACCCGTTGGTGGCCATGGAAATTCAAGATTGAATTCTGGTGGCGAAGACATGAGCTCAACCTCAACAGGATCAAGATCAGCGGAACGAAATACCCATCGCTCTAATCTATCGAGCGAAAACGAGAAGCTGAAGAAGGAGAACGAGAAACTTAAGACTCAATTGGCTCTCGCGAAGAAGCAGTGTGCCGAATTGGTCGCTTTTCTTCGTGACAATGTCAATATTGGGCCTGATCAGATTAGCCGCATCATTAGGCAAGGAACAGGTGGATCCAGCCTTGAGGCGGCGCGTGCTGATGATGGCGCTGAAGGTGAAGGAAAATGTAAGGGTGGAGAGGGTGTGAAGCTCTTTGGAGTTTGGGTGAAGGGTGGTGGAGATGGAAAAAACAAAGTGAAGAAAGAAAATGGTGATCCTAAGTCTCGCAAGAGGGGACATGAAGAGGCAAATTGTGGTGAAAACAAGAAGTCCAAGACTTAG 807 0.4535 MSQQRVSSSAAPFLSKTYEMVDDSVTDDVICWGENGKSFVVVQHAEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKIVSDKWEFANENFKRGQTELLSSIKRRKTQSYVAIRPVGGHGNSRLNSGGEDMSSTSTGSRSAERNTHRSNLSSENEKLKKENEKLKTQLALAKKQCAELVAFLRDNVNIGPDQISRIIRQGTGGSSLEAARADDGAEGEGKCKGGEGVKLFGVWVKGGGDGKNKVKKENGDPKSRKRGHEEANCGENKKSKT 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02887 268 MobiDBLite consensus disorder prediction 236 268 - -
Vivi1g02887 268 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g02887 268 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g02887 268 SUPERFAMILY "Winged helix" DNA-binding domain 9 102 IPR036390 -
Vivi1g02887 268 MobiDBLite consensus disorder prediction 198 218 - -
Vivi1g02887 268 Gene3D - 5 104 IPR036388 -
Vivi1g02887 268 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g02887 268 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g02887 268 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g02887 268 MobiDBLite consensus disorder prediction 122 142 - -
Vivi1g02887 268 MobiDBLite consensus disorder prediction 232 268 - -
Vivi1g02887 268 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g02887 268 MobiDBLite consensus disorder prediction 143 157 - -
Vivi1g02887 268 Coils Coil 140 171 - -
Vivi1g02887 268 MobiDBLite consensus disorder prediction 110 157 - -
Vivi1g02887 268 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 197 IPR027725 -
Vivi1g02887 268 FunFam Heat stress transcription factor B-4 5 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02887 Vivi-Chr1 62824475 62828155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02887 8 233 HSF AT4G36990 50.000 3.74e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi1g02887 HSF_DNA-bind 4.3e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02887 K09419 - gmx:100801638 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02887 1 62824475 62828155 Vivi1g02887 1 62824475 62828155 ECH
Vivi2g03277 2 135311963 135314193 Vivi1g02887 1 62824475 62828155 PCT